PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G02340.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 986aa MW: 109869 Da PI: 6.1795

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G02340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	3e-28	618	668	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OMERI03G02340.1 618 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 668 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	607	688	IPR003035	RWP-RK domain
Pfam	PF02042	7.3E-26	620	668	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.45E-22	837	930	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.1E-25	840	924	No hit	No description
SMART	SM00666	3.5E-25	842	925	IPR000270	PB1 domain
PROSITE profile	PS51745	23.136	842	925	IPR000270	PB1 domain
CDD	cd06407	9.33E-43	843	924	No hit	No description
Pfam	PF00564	5.2E-17	843	924	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 986 aa Download sequence Send to blast
MEQKPPPPRR EEEEEDGLMG CGMSGTGDIA GGDLDLMEEF LLATPGLDLS EFWHPGAASP 60 FSPLFDIGSS VTTFTPPAPA AGEDDRDEAE MPSRSGGGGG LEVSPAHRGW TFQTAPQEVA 120 VEPTVKERLR RALERIASQS QAQRGDGELL VQVWVPTRIG DRQVLTTCGQ PFWLDRRNQR 180 LASYRTVSMK YQFSADESAR ADLGLPGRVF VGRVPEWTPD VRYFSTEEYP RVQHAQYFDI 240 RGSVALPVFE PRSRACLGVV ELVMTTQKVN YSAEIENICN ALKEVDLRSS DVSSDPRSKV 300 VDASYRAIIP EIMDVLRAVC DTHNLPLAQT WIPCICQAKR GSRHSDESYK HCVSTVDEAC 360 YVRDRSVLGF HQACSEHHLF RGEGVVGRAF GTNEPCFSPD ITTYSKTQYP LSHHAKLFGL 420 RAAVAIRLRS VKTGSLDFVL EFFLPMKCIN TEEQRAMLNS LSNTIQQVCY TLRVVKPKEL 480 VNDGPFEISQ PTRPEFYAKS VHENLDELCS GINVPGRTTS LEASEEVSSW IASLVDAQNK 540 GGKGEIDVDL PFGFNKQDDE GFSVTAGWHT SPVIAPDGSM FSGFKQHEDY DVKENTCSSD 600 PSNSNSDKAV EKRRTKTEKT VSLQDLRKHF AGSLKEAAKN LGVCPTTLKR ICRQHGINRW 660 PSRKIKKVGH SLKKLQMVID SVHGPEGTVQ LSSLYENFTK TTWSERELQG DVHFPASEQN 720 FQLEPSVPDR PCEGRFTSHT SGSNSISPSC SQSSNSSLGC SSVPKPQQQH GSAPQLAVKE 780 EISMDENQCS ALIKSASHAE AELQMFVEER PTMLFRSQSQ VLLSEHKPIE NMSNVQKARS 840 DSLKIKAIYG EERCIFRLQP SWGFQRLKEE IIKRFSIAQD THVDLKYLDD ESEWVLLTCD 900 ADLLECIDVY KSSSNQTVRI LVNPSIQPLP NASFGQTGKE CLTLPSVVSQ AGIRRLQIWI 960 LGLRCKLMDS CLLMLQLNRA VFLNWK

Sequence ? help Back to Top

Protein Sequence Length: 986 aa Download sequence Send to blast

MEQKPPPPRR EEEEEDGLMG CGMSGTGDIA GGDLDLMEEF LLATPGLDLS EFWHPGAASP  60
FSPLFDIGSS VTTFTPPAPA AGEDDRDEAE MPSRSGGGGG LEVSPAHRGW TFQTAPQEVA  120
VEPTVKERLR RALERIASQS QAQRGDGELL VQVWVPTRIG DRQVLTTCGQ PFWLDRRNQR  180
LASYRTVSMK YQFSADESAR ADLGLPGRVF VGRVPEWTPD VRYFSTEEYP RVQHAQYFDI  240
RGSVALPVFE PRSRACLGVV ELVMTTQKVN YSAEIENICN ALKEVDLRSS DVSSDPRSKV  300
VDASYRAIIP EIMDVLRAVC DTHNLPLAQT WIPCICQAKR GSRHSDESYK HCVSTVDEAC  360
YVRDRSVLGF HQACSEHHLF RGEGVVGRAF GTNEPCFSPD ITTYSKTQYP LSHHAKLFGL  420
RAAVAIRLRS VKTGSLDFVL EFFLPMKCIN TEEQRAMLNS LSNTIQQVCY TLRVVKPKEL  480
VNDGPFEISQ PTRPEFYAKS VHENLDELCS GINVPGRTTS LEASEEVSSW IASLVDAQNK  540
GGKGEIDVDL PFGFNKQDDE GFSVTAGWHT SPVIAPDGSM FSGFKQHEDY DVKENTCSSD  600
PSNSNSDKAV EKRRTKTEKT VSLQDLRKHF AGSLKEAAKN LGVCPTTLKR ICRQHGINRW  660
PSRKIKKVGH SLKKLQMVID SVHGPEGTVQ LSSLYENFTK TTWSERELQG DVHFPASEQN  720
FQLEPSVPDR PCEGRFTSHT SGSNSISPSC SQSSNSSLGC SSVPKPQQQH GSAPQLAVKE  780
EISMDENQCS ALIKSASHAE AELQMFVEER PTMLFRSQSQ VLLSEHKPIE NMSNVQKARS  840
DSLKIKAIYG EERCIFRLQP SWGFQRLKEE IIKRFSIAQD THVDLKYLDD ESEWVLLTCD  900
ADLLECIDVY KSSSNQTVRI LVNPSIQPLP NASFGQTGKE CLTLPSVVSQ AGIRRLQIWI  960
LGLRCKLMDS CLLMLQLNRA VFLNWK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0E0CUP7	0.0	A0A0E0CUP7_9ORYZ; Uncharacterized protein
STRING	OMERI03G02330.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]