PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G03080.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 178aa    MW: 19752.7 Da    PI: 11.4771
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G03080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.79.4e-112444286
         trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     g++rs+k+ +ek+en+nk+yk++k+++++r  ++ +t+++f++l 
  OMERI03G03080.1  2 GCKRSAKKYREKFENINKYYKRTKHSRSGR--GDGKTYRFFTELA 44
                     9***************************97..77778****9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGCKRSAKKY REKFENINKY YKRTKHSRSG RGDGKTYRFF TELARPCTAP PPLRAPPPPV  60
SLALALVAVA PLATPAGLSA LRVHTRRRLS CSRLRCQGAS PLRHLSWMRR RILTMDDVSF  120
SSGPDTETTE KGRKRKRRRR QKGDGDVRAA DAAGDEAAGG DVARWSEPLP PCSIPPVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131140GRKRKRRRRQ
2132137RKRKRR
3133138KRKRRR
4133139KRKRRRR
5134138RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628078.12e-22trihelix transcription factor GTL1
TrEMBLA0A0E0CUZ21e-125A0A0E0CUZ2_9ORYZ; Uncharacterized protein
STRINGOMERI03G03020.12e-93(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.13e-13GT-2-like 1