PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G03770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1487aa    MW: 162820 Da    PI: 5.8877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G03770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0513771402123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C+++F +k +L+ H+r+ +
  OMERI03G03770.1 1377 FQCDieFCDMTFETKAELRAHQRNiC 1402
                       899999*****************877 PP
2zf-C2H212.50.0004314021424323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       C+   Cgk+Fs++ +LkrH+ +H
  OMERI03G03770.1 1402 CTdeSCGKRFSSHKYLKRHQCVH 1424
                       77778***************998 PP
3zf-C2H213.70.0001914601486123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       ykC+  dCg+sF+  s++ rH ++  H
  OMERI03G03770.1 1460 YKCSapDCGQSFRYVSDYSRHRKKfnH 1486
                       99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005459.1E-132970IPR003349JmjN domain
PROSITE profilePS5118313.6053071IPR003349JmjN domain
PfamPF023754.3E-133164IPR003349JmjN domain
SuperFamilySSF511974.94E-28213394No hitNo description
SMARTSM005588.5E-49229398IPR003347JmjC domain
PROSITE profilePS5118434.774232398IPR003347JmjC domain
PfamPF023733.1E-37262381IPR003347JmjC domain
Gene3DG3DSA:3.30.160.602.1E-413711399IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551213771399IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53813771399IPR007087Zinc finger, C2H2
SMARTSM003552.314001424IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.00614001429IPR007087Zinc finger, C2H2
PROSITE patternPS00028014021424IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-614021436No hitNo description
Gene3DG3DSA:3.30.160.604.9E-714061430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-1014241480No hitNo description
SMARTSM003556.6E-414301454IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96714301459IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-1114311454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014321454IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-1014551482IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36514601487IPR007087Zinc finger, C2H2
SMARTSM003550.1414601486IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014621486IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1487 aa     Download sequence    Send to blast
MPPQPPPAAS ASASAPDPAV PAWLRGLPRA PEYRPTESEF ADPIAFLSRV EREAAAYGIC  60
KVIPPHPRPS RRFVFAHLNR SLVSSCDAPA PAPAAASDSS IPPSSSSPPP ASAAVFTTRH  120
QELGNPRRGR PTPQVLKQVW QSGERYTLDQ FESKSRAFSK THLAGLHEPT ALAVESLFWK  180
ASADRPIYIE YANDVPGSGF AAPVQLQRKK KRKRETAPMD EWEKSSGWRL SNSPWNLQAI  240
ARAPGSLTRF MPDDVPGVTS PMVYIGMLFS WFAWHVEDHD LHSLNFLHTG APKTWYAVPG  300
DRAVELEEVI RVHGYGGNTD RIASLAVLGE KTTLMSPEVL IDNGVPCCRL VQYPGEFVVT  360
FPRAYHVGFS HGFNCGEAAN FATPQWLKFA KEAAVRRAVM NYLPMLSHQQ LLYLLAVSFI  420
SRNPRELLSG IRTSRLRDRK KEDRELLVKQ EFLQDMISEN ELICSFLGKK SVDNVVLWEP  480
DLLPSLTALH PCSSCSKAPE RKGEDGPSIG STQSSSKDNS SSDGTACMTG TQSKGLSMDS  540
KQAPEGEKLD TDDGDDLPFD LSIDSGSLTC VACGILGYPF MAILQPSRKA LEEISLVDKE  600
RYKLSCEKEI CSNVLPCSPN DGSSGCPLIA NRSSSPVENA NFSHQDVKPN RSDISLMGKE  660
FNGTLGKHIG TSCSCSSENT IHPYGDTETP EKKIPSDCPG SELSKQSGRG DVNVPAVEGS  720
DKTISWNTGC AFARPRIFCL QHALEIEEFL ASKGGVHALI ICHADYVKLK ALAISIAEEI  780
EFQFDYKDVA LANASKSDLH LINISIDDEG YEEEGTDWTS RMGLNLKHSS KIRKETSESQ  840
EQPPLSFWGL FSKPSPISVV SNLKWLCRKA RTPYKVVGYA SSPDVVATPD KVKPAVTKTQ  900
IDTSGNAHEN IESEQTLQQD CVLQESNDVA DMCKRPKEND QDGHSLINIP IAVAEYPMMH  960
QVCERPVSVS ACDDPICSFD SQDSPTTAAV PAGKPTREQC GIESTELSTV QQFLDNGLIA  1020
EGGSMNFVSN HEYLESDNAT SVCKDEQLQV QQDQLAMVLC NNPNTELVAG ELHGGAASST  1080
LENEDSCGNT SYCSDTVLKN SKPDTDDQPE TCDHSVVLVT PKSSCDQMIS SSDRSCSLTL  1140
DCPVSTDAAF SSEKLSIAHD LMGSELQAVH NSKAEAAASL TDVKGAKLNS IHTAQLPHES  1200
PSSDFIISEG AQSASATAIP RQNGTSMHTE SNSIDILLGV LADESKVSSG KDEVGKASLT  1260
LMTLAGNDQS ADDGTQDEVA EITDPSHGFC ASDIVSRSIG SSNRTNIICY ARRKHKRKSG  1320
SEFNINSPQS LGSFVRSPCE SLRPRTRPAI VEDMANETKT AETSTANKRK KAKVEAFQCD  1380
IEFCDMTFET KAELRAHQRN ICTDESCGKR FSSHKYLKRH QCVHRDERPF KCPWDGCPMT  1440
FKWLWAQTEH IRVHTGERPY KCSAPDCGQS FRYVSDYSRH RKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-74234128346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-74234128346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206213QRKKKRKR
2207213RKKKRKR
3207214RKKKRKRE
413111317RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630480.10.0lysine-specific demethylase SE14-like isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0E0CV990.0A0A0E0CV99_9ORYZ; Uncharacterized protein
STRINGOMERI03G03700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein