PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G04590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 602aa    MW: 63863.5 Da    PI: 6.733
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G04590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083513881954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  OMERI03G04590.1 351 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 388
                      554459******************************88 PP
2BELL111.93.7e-36211281171
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                      erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q
  OMERI03G04590.1 211 ERQDLQNKVTALMAMLDQVDRRYRHYHHQMQIVMSSFDAVAGGGAARPYTALALQTISRHFRSLRDAIGAQ 281
                      799*****************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-49138280IPR006563POX domain
PfamPF075264.3E-48143278IPR006563POX domain
PROSITE profilePS5007112.001329392IPR001356Homeobox domain
CDDcd000863.40E-12332393No hitNo description
SMARTSM003891.7E-9332396IPR001356Homeobox domain
SuperFamilySSF466894.71E-17333399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27335398IPR009057Homeodomain-like
PfamPF059204.7E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MATFFSSSTN QRDLTGGSGG DMSFQHYPQP SNPYSDSSAG GLIPLPASIV SHSHIAHGGG  60
DEPAAFREAA TADGGEMGLQ TQLLMAHGAA ARGHQGGLSL SLGTQVPVSL YQYRPAGMAA  120
ASLLSPSQSS PMAGRSAQNS IYVQNSRFLR AARELLDEVV NVRDAIKRKG DKNQGKDSGE  180
CKGGDAAGDD KAGSNPQEQE SNSAPELSPS ERQDLQNKVT ALMAMLDQVD RRYRHYHHQM  240
QIVMSSFDAV AGGGAARPYT ALALQTISRH FRSLRDAIGA QAQSARRGLG EQDASAQGGG  300
GGLSRLRYID QQLRQQRAMQ QFGMMQQPQH AWRPQRGLPE SAVSVLRAWL FEHFLHPYPK  360
DSEKLMLARQ TGLSRGQVSN WFINARVRLW KPMIEEMYKE EFGAEMDSNS SSENGGAGGK  420
GKDEAISSED RDEFQSPSSA AAARHAGVVG QLNNPFKSEA MGGAALDVGV GVVGLSSCLG  480
GAMGTYATGL NLNHHVHHPG AAGGNSGTSL LHDALQHHHH HHGGGDARFV SYGDMADLAG  540
GGYDGGSVSL TLGLQHCNNA GPVPAEQQGL LYGGAADFDY INGSDDRQRF GPSSQLLHDF  600
VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-17338396159Homeobox protein Meis2
5bng_B1e-17338396159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680340.0AK068034.1 Oryza sativa Japonica Group cDNA clone:J013131E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630993.10.0BEL1-like homeodomain protein 7
RefseqXP_025879612.10.0BEL1-like homeodomain protein 7
SwissprotO656851e-112BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A0E0CVM70.0A0A0E0CVM7_9ORYZ; Uncharacterized protein
STRINGOMERI03G04570.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-100BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]