PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G05920.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 327aa    MW: 35303.7 Da    PI: 4.309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G05920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1797146255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f  ae Aa a++ a+++++g
  OMERI03G05920.1  97 QYRGVRRRP-WGKWAAEIRDPV----KgIRVWLGTFTNAEAAALAYDDAARAIRG 146
                      69*******.**********75....44***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.45E-1697154No hitNo description
SMARTSM003804.9E-3497160IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2197155IPR016177DNA-binding domain
PfamPF008474.3E-1097146IPR001471AP2/ERF domain
PROSITE profilePS5103223.39397154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3097155IPR001471AP2/ERF domain
PRINTSPR003671.9E-1298109IPR001471AP2/ERF domain
PRINTSPR003671.9E-12136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPAARRV TAGHVWPGGA NKGKKSARAD DFEAAFRDFD NDSDDDEMMA  60
EEEEEEATSE HKPFVFRAKK ARKAAAAAAS RRRKPAQYRG VRRRPWGKWA AEIRDPVKGI  120
RVWLGTFTNA EAAALAYDDA ARAIRGDRAK LNFPSATTPD TRKRGRATAA APAVKATPVI  180
NLVEEDDEEE EVAAAMASIK YEPETSESSE SNALPDFSWQ GMSASDEFVV AAAPLDSDDD  240
LAKKRPRTEP EDTTTTTDSG SGDDTDALFD ALLFADQYNY FNGGAYESLD SLFSADAVQT  300
TAADQGMGLW SFDDGCCLVD VEASLSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2094154263ATERF1
3gcc_A1e-2094154263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103RRKPAQYRGVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632219.11e-141ethylene-responsive transcription factor ERF073
TrEMBLA0A0E0CW950.0A0A0E0CW95_9ORYZ; Uncharacterized protein
STRINGOMERI03G05870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-17related to AP2 2