PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G06040.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 230aa MW: 25876.9 Da PI: 9.6896

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G06040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.5	4.2e-17	137	225	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v + +l lp++f+e++ k + +tl de+ ++++ ++ ++++ l++GW +F+ ++gL +gD +vF+l++ ++f +v OMERI03G06040.1 137 FVKPMLHSHVVRGFWLGLPRHFCETYLPK--HDAIVTLLDEKDERFDTNY--LAYKNG--LSGGWAGFALDHGLLDGDAIVFQLVKPTTF--KV 222 89**********************422..4568***********..566555..9********************9986666..77 PP EEE CS B3 95 kvf 97 +f OMERI03G06040.1 223 LIF 225 776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-19	128	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-24	130	226	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.49E-27	135	225	No hit	No description
SMART	SM01019	8.5E-18	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-15	137	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.97	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGMGMEKGMT AYEAARERTV EENKRKMEAL NLRHLSAAIA IAPKTPSPMK QKRRRIIEAA 60 VVAPSPPRRS RRLANLPEVK YAEVAPDGAE RMKRSPRKAI DSIYLATRGS ISMEARLEAA 120 GKAEELESQL DPEFPSFVKP MLHSHVVRGF WLGLPRHFCE TYLPKHDAIV TLLDEKDERF 180 DTNYLAYKNG LSGGWAGFAL DHGLLDGDAI VFQLVKPTTF KVLIFTEHYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	55	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK122017	0.0	AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633231.1	1e-161	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-162	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A0E0CWB5	1e-169	A0A0E0CWB5_9ORYZ; Uncharacterized protein
STRING	OGLUM03G06210.1	1e-161	(Oryza glumipatula)
STRING	ORUFI03G06050.1	1e-161	(Oryza rufipogon)
STRING	OS03T0184500-01	1e-161	(Oryza sativa)
STRING	ONIVA02G06710.1	1e-161	(Oryza nivara)
STRING	ORGLA03G0060000.1	1e-161	(Oryza glaberrima)
STRING	OBART03G06210.1	1e-161	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]