PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G06930.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 252aa    MW: 27184.9 Da    PI: 9.7592
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G06930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-066284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  OMERI03G06930.2 62 FVCEICNKGFQRDQNLQLHRRGH 84
                     89*******************88 PP
2zf-C2H214.50.0001138160123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  OMERI03G06930.2 138 WKCDKCSKKYAVQSDWKAHTKTC 160
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-76184No hitNo description
Gene3DG3DSA:3.30.160.606.9E-66184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
PfamPF121713.4E-56284IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355190103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEVETSSGTA ERGAGAGAGA QQQPPPPPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEVRK RVYVCPEPTC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHTKTC GSREYRCDCG TLFSRRDSFI  180
THRAFCDALA EESAKARAAP PPPADEDGTS ASAGAPPPQA PLPPPAPAPA PAPPPPQAAA  240
PAPAAQPEQR GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36134195364Zinc finger protein JACKDAW
5b3h_F6e-36134195364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632656.11e-130protein indeterminate-domain 1
SwissprotQ9SCQ61e-117IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0E0CWP20.0A0A0E0CWP2_9ORYZ; Uncharacterized protein
STRINGOS03T0197800-001e-129(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]