PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G07870.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 268aa    MW: 30577.3 Da    PI: 8.3298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G07870.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19231091199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  OMERI03G07870.2  23 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 109
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B348.31.8e-151692411487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++ k+e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL  gD++ F++ ++
  OMERI03G07870.2 169 QYLNVPMEFQEAHEYAKRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAIGDTCFFRVLRE 241
                      56889********999776..4554.4599*******9876667777*************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2110112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2012116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.15613110IPR003340B3 DNA binding domain
CDDcd100177.90E-2013108No hitNo description
SMARTSM010194.8E-1615110IPR003340B3 DNA binding domain
PfamPF023625.4E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-24152263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-16153244IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-5154263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308156263IPR003340B3 DNA binding domain
PfamPF023622.5E-13170241IPR003340B3 DNA binding domain
CDDcd100173.12E-10171237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEDQMANIRS TDFEFFRIIL PGSSKTKLKL PYKFARELGD RELREARLRV AGEGRRPWDV  60
KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH FLVFRYDGAA AFTVTVFDET MCRRDYRRRH  120
HDAADSGSSS SDSSDAAAAT AAAEGVGDVA LSQFAVTLRQ CNLEDKQAQY LNVPMEFQEA  180
HEYAKREKVV LRMRGEAWTV RLKHSRRERG QRTAFRYGWH RFCVDNGLAI GDTCFFRVLR  240
EGDLRRGGGA DDHVLKVAVR KADGTTLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708610.0AK070861.1 Oryza sativa Japonica Group cDNA clone:J023073O05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.11e-170B3 domain-containing protein Os03g0212300
SwissprotQ10Q261e-171Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0CX330.0A0A0E0CX33_9ORYZ; Uncharacterized protein
STRINGOMERI03G07820.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]