PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G08070.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 188aa    MW: 21080.2 Da    PI: 8.6625
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G08070.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY38.54e-12140146
            YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                     +d++s se++Cyv+C++Cnt+la       l+ +vtv+CGhC +l 
  OMERI03G08070.3  1 MDLVSPSEHLCYVRCTYCNTVLA------RLMDTVTVKCGHCNNLS 40
                     578999***************97......699**********9984 PP
2YABBY93.45.5e-297513998162
            YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                         +s  ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  OMERI03G08070.3  75 LPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 139
                      445577889999***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-376140IPR006780YABBY protein
SuperFamilySSF470952.23E-886141IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-594141IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDLVSPSEHL CYVRCTYCNT VLARLMDTVT VKCGHCNNLS FLSPRPPMVQ PLSPTDHPLG  60
PFQGPCTDCR RNQPLPLVSP TSNEGSPRAP FVVKPPEKKH RLPSAYNRFM REEIQRIKAA  120
KPDIPHREAF SMAAKNWAKC DPRCSSTVST SNSNPEPRVV AAPIPHQERA NEQVVESFDI  180
FKQMERSG
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1065530.0AB106553.1 Oryza sativa Japonica Group DROOPING LEAF mRNA for DL protein, complete cds.
GenBankAY4947130.0AY494713.1 Oryza sativa (japonica cultivar-group) drooping leaf (DL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630076.11e-127protein DROOPING LEAF isoform X2
SwissprotQ76EJ01e-128YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0E0CX861e-136A0A0E0CX86_9ORYZ; Uncharacterized protein
STRINGOGLUM03G08460.11e-126(Oryza glumipatula)
STRINGORUFI03G08400.11e-126(Oryza rufipogon)
STRINGONIVA03G09180.11e-126(Oryza nivara)
STRINGOBART03G08320.11e-126(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-48YABBY family protein