PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G09350.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 705aa    MW: 77261.6 Da    PI: 7.0414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G09350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-081456347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E++ + +a +q G++ +++I  +++  ++  q++++++ +
  OMERI03G09350.1 14 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 56
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-91060IPR009057Homeodomain-like
PROSITE profilePS5129313.1551061IPR017884SANT domain
SMARTSM007175.2E-71159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-51463IPR009057Homeodomain-like
PfamPF002493.4E-71456IPR001005SANT/Myb domain
CDDcd001671.06E-61457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042254Biological Processribosome biogenesis
GO:0005730Cellular Componentnucleolus
GO:0030529Cellular Componentintracellular ribonucleoprotein complex
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MSLVRSAPAR QWAAWTRQEE QNFFNALRQV GKNFEKITLR VQSKSKDQVR HYYYRLVRRM  60
KKLLGPEFSL DAKNSKDTIA AMLCWWSLLE KFSCSASKLH LKPRRFKTFV EALGNQLLKD  120
RNKTRKKCPR GDVCLSSSSS AVNRTPGNES FSVKLLAVDV SNGSKVGSSK GSFFKKVTEP  180
NCNNKSGATK GDLSATRTVK QKRRAGGIVA SAAYKKWERA AMAGVSLVAD AAEELERNTV  240
NADGRMLSPS SSNVCTVDGL GTNHIKEADQ QAPAKLKLQL FPINEATRKA LEKDEHNPHL  300
ELTLSARKKI SSVLEHLNRK WGNSNIASGE LLLFPYCAHQ EDLATYQRWT TKDTVAVADV  360
FLSVNSPSVF RLRYGWFSLA ELEAGVSEIF LTHFENCLIP EDIHAKSPLE ACVQKDGNSL  420
SSCAPEQNPC GSKDQSALLL AMPSSTGKSA QVPEQCIDAE SRPSYHKTRM DCAAVSEGEW  480
ADTLTDISVG YLLTEASRGA NTDCPGTSVV KNTLLLENPC SYDSFDAAVA LHASRYKSAE  540
QPALASHSSI WGAEETCDAF SFNLPASRKR EGSNNSASSS PDSDSDVHPS NSEGFQGFLQ  600
DLSGAAVAHN PCIDDAKDIE SLCAESPPRS DHDSAPKDQS LADLYWPDSL GPLDLDIPSA  660
TYHADDLLLG DSQNSWNRMM ANSLDAFRNL SFFTADKNDS IPSIM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026880.0AK102688.1 Oryza sativa Japonica Group cDNA clone:J033102O16, full insert sequence.
GenBankAK1037910.0AK103791.1 Oryza sativa Japonica Group cDNA clone:J033145L18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632626.10.0TSL-kinase interacting protein 1
RefseqXP_015632627.10.0TSL-kinase interacting protein 1
TrEMBLA0A0E0CXS80.0A0A0E0CXS8_9ORYZ; Uncharacterized protein
STRINGOMERI03G09420.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-166TSL-kinase interacting protein 1