PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G10160.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 615aa    MW: 66971.3 Da    PI: 8.3495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G10160.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-13441478643
                      HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                      k  r   fskR ++i+ KA+EL +LC++ vav+ +s++
  OMERI03G10160.2 441 KKVRDACFSKRHTTIFNKANELAILCGVMVAVVFVSPN 478
                      6678999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF126565.2E-23158228IPR026822Spp2/MOS2, G-patch domain
SMARTSM004431.9E-8179225IPR000467G-patch domain
PROSITE profilePS5017412.288181227IPR000467G-patch domain
SMARTSM004321.4E-9429489IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.998429478IPR002100Transcription factor, MADS-box
CDDcd002665.54E-15430490No hitNo description
SuperFamilySSF554552.62E-13430505IPR002100Transcription factor, MADS-box
PfamPF003191.8E-14440486IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEKEKKLSFS IPSKARPPRP ASRPAATAAA AAASDDGEYS AASARAPAPQ FVTEFDPTQT  60
LATGAAPSVI APLQNSGHFL NHRSRKPSSL PTPEEEAALA ASAAGGPSFV LDTSTAPDNP  120
SSHIAYGLTV RNAAAEPEKT PPPPPPAADA PSGDLMLRRY KEDMASLPDH RGLDEFRDVP  180
VEGFGAALLA GYGWSEGKGI GRNNKGDTKV VEYDRRAGTQ GLGYNPSEAD PKKTRAGEWV  240
IGGNKETQNG NAKKRDRDSR GRTEDRDSSS RQKRSGERRA EREVQEKDRN SRHTKQVKIG  300
GGGGDKMRWL HSDIKVRVVS ERLSKKLYLK KGRVLDVVGP TTCDIIMDDQ SELVQGVEQD  360
MLETVLPRTN GLVLLLAGEH KGLCGHLVEK NSEEETGVVE LSNTKDMIRV KYDQIAEYIG  420
DPESLEARTT RKKIEINRGD KKVRDACFSK RHTTIFNKAN ELAILCGVMV AVVFVSPNAN  480
GGIFSFGYPS VSSVANRFLA NAPNNTSVSS STQSGRDVEI RELEREEREL KEHLQASTDQ  540
NKLLREAIAA RDGGQLMLLL QSDCSELAPK GLVAIVRLWF RNSLVGIGLD RLCWLQQQPA  600
SHSQLPQILF GLDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342340.0AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBankAC1342400.0AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631747.10.0protein MOS2
RefseqXP_015631748.10.0protein MOS2
RefseqXP_015631750.10.0protein MOS2
RefseqXP_015631751.10.0protein MOS2
RefseqXP_015631752.10.0protein MOS2
RefseqXP_015631756.10.0protein MOS2
RefseqXP_025879574.10.0protein MOS2
RefseqXP_025879575.10.0protein MOS2
TrEMBLA0A0E0CY620.0A0A0E0CY62_9ORYZ; Uncharacterized protein
STRINGOBART03G10890.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP643022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-11AGAMOUS-like 29