PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G10610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 238aa    MW: 25071.1 Da    PI: 6.5038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G10610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-10200227330
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                      ++h+e+ErrRR+riN  +++Lr+llP+ 
  OMERI03G10610.1 200 KSHSEAERRRRERINAHLARLRSLLPNT 227
                      79************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.357197238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-8200227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-8200227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.33E-7201228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGAHGDHRHH HHHQEAGVLV DEEEEEIEQA CGGPTSGVVE QEVGGDGGGV CQDAAGMVFE  60
ATSSVGSVSA TMGPPPIMCW PPPAQPVHGA IHHHHNLGGG GGQQSPFFPL LPPLPPQPPP  120
PPPFFADFYA RRALQYAYDH SGGASSSSDP LGLGGLYMGH HGSHVAGMMM PPPFAPSPFG  180
DLGRMTAQEI MDAKALAASK SHSEAERRRR ERINAHLARL RSLLPNTTKV VVQSISPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629966.21e-100LOW QUALITY PROTEIN: transcription factor bHLH30
TrEMBLA0A0E0CYB71e-170A0A0E0CYB7_9ORYZ; Uncharacterized protein
STRINGOMERI03G10590.11e-171(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-11bHLH family protein