PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G10750.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 255aa    MW: 25976.9 Da    PI: 5.0695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G10750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-184695255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  OMERI03G10750.1 46 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 95
                     59****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575128No hitNo description
Gene3DG3DSA:3.30.730.106.9E-2946105IPR001471AP2/ERF domain
PROSITE profilePS5103221.91846103IPR001471AP2/ERF domain
SMARTSM003806.6E-3446109IPR001471AP2/ERF domain
PRINTSPR003675.9E-84758IPR001471AP2/ERF domain
PfamPF008475.3E-114795IPR001471AP2/ERF domain
CDDcd000182.94E-1947105No hitNo description
SuperFamilySSF541711.63E-1947104IPR016177DNA-binding domain
PRINTSPR003675.9E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVKNTSNKCI AAAGATAAAG LGGGAASCSG DGKVTAAAAA ALAVRPYKGV RMRSWGSWVS  60
EIRAPHQKRR IWLGSYATPE AAARAYDAAL LCLKGSDAVL NFPSSASSRR RLDIHRGGTD  120
SAEGDMSPRS IQRVAAAAAA AFDAAAAGVV VDDSCSCSAE AMSSTPTSGT TSLSTLGSSG  180
GGDVLDHATT PSSSSSAAAN VCSPPMEGDH ELWTELDAFT SPKFMDLMAA GGTAFSSPWE  240
EPEEDGELMR LWSFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352060.0AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630150.11e-129ethylene-responsive transcription factor ERF013
TrEMBLA0A0E0CYD70.0A0A0E0CYD7_9ORYZ; Uncharacterized protein
STRINGOMERI03G10750.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-25ERF family protein