PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G11850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 188aa    MW: 19507.2 Da    PI: 7.0992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G11850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164870123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  OMERI03G11850.1 48 FECKTCNRQFPSFQALGGHRASH 70
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-846113No hitNo description
SMARTSM003550.164870IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274875IPR007087Zinc finger, C2H2
PfamPF139121.1E-124872IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139124.1E-990115IPR007087Zinc finger, C2H2
SMARTSM003552.591113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAYGKRPRQQ AEEAAFSLFD SSDMARILLL FSGAHGGAAA ASPPERMFEC KTCNRQFPSF  60
QALGGHRASH KKPRLADGDP AAEAPAKPKV HGCSICGLEF AVGQALGGHM RRHRAVMADG  120
LGLGLSLGLG IGVVGQSDDD GGKKKAAAAA AAAELVFDLN APATEEEPDR ARPAGLAVEF  180
PVVVDFPC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370690.0AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK1113380.0AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.11e-105zinc finger protein ZAT7
TrEMBLA0A0E0CYU91e-131A0A0E0CYU9_9ORYZ; Uncharacterized protein
STRINGOMERI03G11920.11e-114(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.19e-27C2H2 family protein