PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G12240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 612aa    MW: 68015.2 Da    PI: 4.4796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G12240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69e-1135110348
                      SS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqkyl 48 
                      +W++eEd+ l   ++++G++                               +W+ Ia+ +   +t+ qc+ rw++yl
  OMERI03G12240.1  35 SWSAEEDDVLRTQIALHGTDkyeffplpistdfffldlitifytvfpfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 110
                      6***********************************************************9.**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.628114IPR017930Myb domain
SMARTSM007171.1E-632112IPR001005SANT/Myb domain
CDDcd001677.24E-735110No hitNo description
PfamPF139211.5E-1036126No hitNo description
Gene3DG3DSA:1.10.10.609.2E-163655IPR009057Homeodomain-like
SuperFamilySSF466891.25E-1678114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-1687117IPR009057Homeodomain-like
SMARTSM007175.0E-4115193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-16118195IPR009057Homeodomain-like
CDDcd001675.45E-4119190No hitNo description
PROSITE profilePS512948.001144195IPR017930Myb domain
SuperFamilySSF466891.25E-16163192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MATGPDLTPP AAAAPAASAE APSASAAKKD RHIVSWSAEE DDVLRTQIAL HGTDKYEFFP  60
LPISTDFFFL DLITIFYTVF PFPFGSWTII AAQFKDKTAR QCRRRWYNYL NSECKKGGWS  120
REEDLLLCEI SELANMWSVT SSVRQQARHI AMTMELSMYA QKVLGNKWTE IAKVVSGRTD  180
NAVKNRFSTL CKRRVKDDEL FKENGSLCSS ASAKRALAQT ECLTSGASGS APPIKQMRPC  240
NSDFKENMTP NMRLIGQDKS TQDSRQPLAI VYKNNQDNMN TMDTQNLVAK TAAKQLFTGE  300
QNSLITAMCI IAGVKHEGNF LNKDDPKIAT LLQRADLLCS LATKINTENT SQSMDEAWQQ  360
LQHHLDKKDD NDMSESSMSG MASLLEDLDD LIVDPYENEE EEDQNLREQT EQIDMENKQN  420
SSQTSMEVTS QMVPDNKMED CPNDKSTEDN NMEPCPGEDI PTSENLTEAA IEDSLLQCVE  480
YSSPVHTVIQ AKTDAEIAAS ENLSEVLEHN RLQCIQLASP AQTTTPVEAN AETPASEKLS  540
EVVKCNNPPC MEFTSPAHTV PTFLPYADDM PTPKFTASER NFLLSVLELT SPGSRPDTSQ  600
QPSCKRALLN SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-18361959159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-18361959159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634260.0AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882808.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0CZ150.0A0A0E0CZ15_9ORYZ; Uncharacterized protein
STRINGONIVA07G22540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-66MYB family protein