PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G13380.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 175aa    MW: 19004.8 Da    PI: 9.2487
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G13380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.3e-112779557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
                     +   rk +NR++A+rsR +K+++++ L+ ++++L  eN+a++  +    + + 
  OMERI03G13380.1 27 RQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAGAGAALQRCR 79
                     4556888**********************************987766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-102269No hitNo description
SMARTSM003381.1E-102387IPR004827Basic-leucine zipper domain
PfamPF001701.3E-72471IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7142568IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-82773No hitNo description
CDDcd147022.08E-142879No hitNo description
PROSITE patternPS0003603145IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSVAPAPEGS ARRAAAAAAA AATKEERQRN RKRSNRLSAQ RSRMKKQQYV DGLAVEAEQL  60
RRENDAMRAG AGAALQRCRL VEQENRVLAA HARELCSGLQ LRASQLRLLG EVAGVPLDVP  120
DIADHLVQLY GGGLGMTTLS PPPPLLPLPP QIEMLFFQPD SVMDPVSMLQ GYENI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1347690.0AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence.
GenBankAK1099290.0AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631799.15e-90ocs element-binding factor 1
TrEMBLA0A0E0CZH71e-121A0A0E0CZH7_9ORYZ; Uncharacterized protein
STRINGOMERI03G13470.11e-122(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125042837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-14basic leucine-zipper 44