PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G13500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 203aa    MW: 22066.9 Da    PI: 6.2847
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G13500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26036.31.6e-1111016646100
           DUF260  46 lkalpeeeredamsslvyeAearardP..vyGavgvilklqqqleqlkaelallkee 100
                       ++lp ++r d +s lvye +a++rdP  vyG+v+ i+ lq+q +ql+ +la++++e
  OMERI03G13500.1 110 CRELPAQQRGDEVSNLVYEVNAQMRDPvpVYGCVEAISFLQNQASQLQMQLAAAQAE 166
                      67899**************999999963379**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031957.3E-9111164IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAAMLEKGGG SRGRKRRRGP EAMAQGAQGA PLQPEAATTG IRWRCTGLAW DALGGVRDEG  60
EEDGVAKEHE VVGLFGIGDG VEGLDTGHHV FPASTLGVAA SMALKARTPC RELPAQQRGD  120
EVSNLVYEVN AQMRDPVPVY GCVEAISFLQ NQASQLQMQL AAAQAEILCI QDATPRRQRE  180
REECKRERRE RRGEGEKVLT WTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218GRKRRRG
21317RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CZJ81e-145A0A0E0CZJ8_9ORYZ; Uncharacterized protein
STRINGLPERR05G10020.13e-25(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-11LBD family protein