PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G13590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 216aa    MW: 25131.8 Da    PI: 12.0363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G13590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-082341848
                     HTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 18 qlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     + G+++W+++a+ ++   +R++ qc++rw+++l
  OMERI03G13590.1  2 ENGSRHWRRVAAQIPrrRRRSPVQCRDRWRDHL 34
                     57999*************************986 PP
2Myb_DNA-binding45.71.5e-1484131348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      +WT+eEd +l ++  + G+++W+++a+ ++   +R++ qc++rw+++l
  OMERI03G13590.1  84 AWTPEEDAILERLAMENGSRHWRRVAAQIPrrRRRSPVQCRDRWRDHL 131
                      7********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.006138IPR017930Myb domain
SMARTSM0071771136IPR001005SANT/Myb domain
PfamPF002491.0E-6234IPR001005SANT/Myb domain
CDDcd001670.00385234No hitNo description
SuperFamilySSF466897.9E-7343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-6337IPR009057Homeodomain-like
PROSITE profilePS5129416.15479135IPR017930Myb domain
SMARTSM007171.1E-1181133IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-1783185IPR009057Homeodomain-like
PfamPF002492.9E-1484131IPR001005SANT/Myb domain
CDDcd001677.63E-1084131No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1684143IPR009057Homeodomain-like
SMARTSM007171.5136191IPR001005SANT/Myb domain
PROSITE profilePS500905.866139189IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-5144189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MENGSRHWRR VAAQIPRRRR RSPVQCRDRW RDHLARDVFH RPEWALAHLL IPRELSSSSS  60
TTVASSPASP LLGWCVVCIR LPPAWTPEED AILERLAMEN GSRHWRRVAA QIPRRRRRSP  120
VQCRDRWRDH LARDVFHRPF TSADDTELAR LCLRLDDACA AAGHRWKHVS RAVYGRSSCA  180
VKRRWRKLRK SDAFLSALWR PRTTAPTANA AITTTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A4e-138518514103MYB21
3osf_D4e-138518514103MYB21
3osg_A4e-138518514103MYB21
3osg_D4e-138518514103MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642261.13e-77transcription factor MYB44
TrEMBLA0A0E0CZK91e-150A0A0E0CZK9_9ORYZ; Uncharacterized protein
STRINGOMERI03G13740.15e-91(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-06myb domain protein r1