PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G14670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 401aa    MW: 41015.9 Da    PI: 5.4457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G14670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY781.1e-24171231259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg+ WrKYGqK++++s++prsYYrCt++   gC ++++ +r++ dp+  +itY geH+++
  OMERI03G14670.1 171 EDGHVWRKYGQKDIQNSPYPRSYYRCTHKldqGCGARRQTQRCEADPSNYDITYYGEHTCR 231
                      8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-27162233IPR003657WRKY domain
PROSITE profilePS5081123.479165233IPR003657WRKY domain
SuperFamilySSF1182902.35E-24168233IPR003657WRKY domain
SMARTSM007743.7E-34170232IPR003657WRKY domain
PfamPF031067.7E-24171231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MQLPHFSLFP SSDCFSAFSP AIYKTRIGTA NFASFARYIM AFSSEGGVPA ERVAAAVNDL  60
VEVRDGLVRL RGFLPPPQAE QSSSRPPCAA ELMDATMSKL MSAMATLGGS GDIAGEVDAA  120
GRWTSVAESA DPMVVRREGE SSAGRTRRRR GGGSRSGRGR SSNKRVAATL EDGHVWRKYG  180
QKDIQNSPYP RSYYRCTHKL DQGCGARRQT QRCEADPSNY DITYYGEHTC RDPSTIIPTA  240
IANAAGAASD GPNNNIISFA TGGVVAASSR LAREGTTATT TSAATQLSSS WGTSGGGGGG  300
GDDVFSSSGE RFMQWDELAA AVVHVSSAGV TSSTVGSAAA PAAENDGGNG DTAAGGGGGD  360
GGGGGGGAGS FPSSPSAGSL GFVVGPLGSI EDVDDFFPFD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-29163231169OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052440.0AK105244.1 Oryza sativa Japonica Group cDNA clone:001-113-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629721.10.0probable WRKY transcription factor 53 isoform X1
TrEMBLA0A0E0D0410.0A0A0E0D041_9ORYZ; Uncharacterized protein
STRINGOMERI03G14840.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-21WRKY DNA-binding protein 46