PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G16120.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 243aa    MW: 26953 Da    PI: 4.802
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G16120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.24.2e-11180240170
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                      +fYn +A + GFs+r  + +k+ ++++  +r+f+Cs++g+++ ++++         +tr++C a+l++ k
  OMERI03G16120.1 180 QFYNIHAWDSGFSIRLGRLQKNPTTKNLNMREFQCSRSGTPRANQRS---------TTRCDCPARLRLLK 240
                      6***************************************9987665.........99******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-8180239IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEELHPTRSF LQLMASMHEP ADQVALRIEA DLLKCDEDIP YRGDASPPEF PVVPADGSLV  60
GRTEMLLDSE GDPIVMDIAE QTEHTDYDSP IAESEPMQQS TPSGTVFEAL DAEQTGYSSA  120
TSASTKRRKR RWAGTDLLVN NPDFAGAIEQ AIRNASARAT AAICHPREGQ VFDTEGEAYQ  180
FYNIHAWDSG FSIRLGRLQK NPTTKNLNMR EFQCSRSGTP RANQRSTTRC DCPARLRLLK  240
TST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D0T40.0A0A0E0D0T4_9ORYZ; Uncharacterized protein
STRINGOMERI03G16270.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-10FAR1-related sequence 11