PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G19190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 529aa    MW: 54337 Da    PI: 6.6529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G19190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.82e-551425262374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaal.kl.... 83 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ l    ++  ++a+++ + se+                +l    
  OMERI03G19190.1 142 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARMLPAaVGPAAAAAVRVPPCSERPtpafaaA------EpRLfras 229
                      689*************************************************9867777777776555554443334321......22112335 PP

             GRAS  84 ...fsevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeel 158
                         f+evsP++ + + +aN aI +a          + +H++D+++s+G+QWp+Ll++L+ +p  + pps+R+T+vg+ ++          +   
  OMERI03G19190.1 230 lirFHEVSPWFALPNALANAAIAQASTCGaaaatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRAPPSVRLTVVGPGATAtspaapfsASPPG 323
                      589********************986543344455788************************656699********987778899999878888 PP

             GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse 251
                            L ++A+++ ++++++   a +l+d        + gEal+V+l+++l +        ++er+e+L+  ++l+P++vv++e ++   +++
  OMERI03G19190.1 324 YDFSPHLLRYAKSISLDLRISR--AATLDDA----VPGDDGEALVVCLQFRLGHAA------AEERREILRKARGLNPELVVLSELDSGVvGGG 405
                      99999***************98..5667766....66789**********999997......445899*******************7764333 PP

             GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                            + +f+  le  + +++s++a +    + + + Er+ll+ e+  ++a+   +     e  e Wrer+ +aGF+++p++ +a+++a++ll
  OMERI03G19190.1 406 gdggGAAGEFAARLELLWRFLESTSAAF----KGKDVEERRLLEAEAGAILAADVGA----GEGREGWRERMAAAGFEEAPFGAEAVESARSLL 491
                      45558999****************9997....7777888888899999999988877....788899*************************** PP

             GRAS 342 rkvksdgyrve..eesgslv.lgWkdrpLvsvSaWr 374
                      rk++  g+++       ++v l Wk++p+ ++S Wr
  OMERI03G19190.1 492 RKYD-SGWEMSppAPATAAVaLRWKGQPVSFCSLWR 526
                      ****.5555553355555555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.637115504IPR005202Transcription factor GRAS
PfamPF035146.9E-53142526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSYHEQERHG LAAASGNGLD WFEESMSSFL AADVDLAGGG GGGGGAGGGG YAWWWAASPA  60
AQQDDIGSVV AQTLSPPSTA APAAASPSIA SPAASSPSDV PSSSSKKRKS PAHRASGHTG  120
GKKGGGGKGG GGGADRDMRW AEQLLNPCAV AVEAGNLSRV QHLFYVLGEL ESFSGDANHR  180
LAAHGLRALA RMLPAAVGPA AAAAVRVPPC SERPTPAFAA AEPRLFRASL IRFHEVSPWF  240
ALPNALANAA IAQASTCGAA AATPRPLHVV DLGVSHGVQW PTLLESLTRQ PGGRAPPSVR  300
LTVVGPGATA TSPAAPFSAS PPGYDFSPHL LRYAKSISLD LRISRAATLD DAVPGDDGEA  360
LVVCLQFRLG HAAAEERREI LRKARGLNPE LVVLSELDSG VVGGGGDGGG AAGEFAARLE  420
LLWRFLESTS AAFKGKDVEE RRLLEAEAGA ILAADVGAGE GREGWRERMA AAGFEEAPFG  480
AEAVESARSL LRKYDSGWEM SPPAPATAAV ALRWKGQPVS FCSLWRPAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-2413952885475Protein SHORT-ROOT
5b3h_B1e-2413952831421Protein SHORT-ROOT
5b3h_E1e-2413952831421Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125132GGKGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A0E0D1Z80.0A0A0E0D1Z8_9ORYZ; Uncharacterized protein
STRINGOMERI03G19180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-47GRAS family protein