PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G19870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 414aa    MW: 44132.7 Da    PI: 6.5605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G19870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001276298123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cg+ F +   L  H  +H
  OMERI03G19870.1 276 YECHGCGRAFQSYQALGGHRASH 298
                      99********9999888888777 PP
2zf-C2H211.90.00071352374123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F +   L  H r+H
  OMERI03G19870.1 352 FVCPICSKEFGSGQALGGHKRSH 374
                      89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-81739No hitNo description
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
PfamPF139127.4E-51739IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-8271298No hitNo description
PfamPF139124.0E-10275300IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388276303IPR007087Zinc finger, C2H2
SMARTSM003550.52276298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18352375IPR007087Zinc finger, C2H2
PfamPF139128.0E-12352375IPR007087Zinc finger, C2H2
SMARTSM003550.048352374IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280354374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDDDVMVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKTVR RWMQSGGGYG LRENPKKTRR LSAGTGAGGG GDNDDGDACH HRGGDLLSSS  120
SCRSVLGRVR SHAPPAGGAV YADDSEDVGV DVDGGGGDDR DRDREMLVMA APRRRPRSMR  180
VPAPVRDEFV VDEEPEDVAL CLVMLSRDTG RPWNSRPSDE YSSLMYNSNY HHHDAVSDDD  240
LELSLSSPYA DTEIRTKKRR KTTTASTGGG EKRGRYECHG CGRAFQSYQA LGGHRASHKR  300
INSNCSLVKP PADQPEPSIE TSFSSASTSV SPADTIISAS TVAKMVKKPT KFVCPICSKE  360
FGSGQALGGH KRSHSIAGEL YERGHADGIV KPEQPLLADR FLDLNLPAPG GDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177PRRRPRS
2256260KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379990.0AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055830.0AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.10.0uncharacterized protein LOC4333158
TrEMBLA0A0E0D2C00.0A0A0E0D2C0_9ORYZ; Uncharacterized protein
STRINGOMERI03G19780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-21C2H2-like zinc finger protein