PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G20220.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 604aa    MW: 64336.9 Da    PI: 6.3004
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G20220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.43.6e-911906032374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lL+ecA+av+ +d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++  s +++  + l f+e+sP+  f+
  OMERI03G20220.1 190 AQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRNA-SFDSTRRTALkFQELSPWTPFG 282
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege..................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLa 166
                      h++aN aIle++ ++                  +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+g+rL+
  OMERI03G20220.1 283 HVAANGAILESFLEAaaagaaaassssssstppTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQRLE 376
                      **********98665566667777788888888899************************8889********996655788999********** PP

             GRAS 167 kfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..... 251
                      kfA+ +gvpf+f+++++  +l+dl+l +L++++     alaVn+v +l  +          rd+++  +++l+P+vv+vve+ead+ ++     
  OMERI03G20220.1 377 KFARLMGVPFSFRAVHHAgDLADLDLAALDLREggaTAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPeadps 463
                      **************97767**************8877899********9998.......5589*********************9977778999 PP

             GRAS 252 .......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                              F++ f e l+++sa +dsle+++p++s+er ++Er+ +gr+iv++v+c  +++ er+et+++W +r+++aG++p+++se++a++++
  OMERI03G20220.1 464 seadtdaAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERA-VGRAIVDLVSCPASQSAERRETAASWARRMRSAGLSPAAFSEDVADDVR 556
                      9999999*************************************.************************************************* PP

             GRAS 339 lllrkvksdgyrveee............sgslvlgWkdrpLvsvSaWr 374
                      +llr++k +g+++ +              + ++l Wk++p+v++SaW+
  OMERI03G20220.1 557 SLLRRYK-EGWSMRDAggatddaagaaaAAGAFLAWKEQPVVWASAWK 603
                      *******.8899985555666677777688899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.698163572IPR005202Transcription factor GRAS
PfamPF035141.2E-88190603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH NHTYYHHSHS  60
HYNNNSNTTY YYQGGGGGGG YYYAEEEQPA AYLEECGNGH QFYMDEDFSS SSSSRQFHSG  120
TGAPSSAPVP PPPSATTSSA GGHGLLEAAD FSFPQVDISL DFGGSPAVSS SSGAGAGAAP  180
SSSSSGRWAA QLLMECARAV AGRDSQRVQQ LMWMLNELAS PYGDVDQKLA SYFLQGLFAR  240
LTTSGPRTLR TLAAASDRNA SFDSTRRTAL KFQELSPWTP FGHVAANGAI LESFLEAAAA  300
GAAAASSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP  360
SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHAGDLADL DLAALDLREG GATAALAVNC  420
VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DPSSEADTDA AFVKVFGEGL  480
RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA  540
GLSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAAGAFLA WKEQPVVWAS  600
AWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-1591386044420Protein SHORT-ROOT
5b3h_E1e-1591386044420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629293.10.0protein SHORT-ROOT 2
SwissprotQ75I130.0SHR2_ORYSJ; Protein SHORT-ROOT 2
TrEMBLA0A0E0D2H50.0A0A0E0D2H5_9ORYZ; Uncharacterized protein
STRINGOMERI03G20080.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-134GRAS family protein