PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G20590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 614aa    MW: 65921.2 Da    PI: 10.1708
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G20590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32289345259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+Hnh+
  OMERI03G20590.1 289 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQIIYRGQHNHQ 345
                      8****************************************.***************8 PP
2WRKY103.71e-32455513159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  OMERI03G20590.1 455 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 513
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-29279347IPR003657WRKY domain
PROSITE profilePS5081124.593283347IPR003657WRKY domain
SuperFamilySSF1182906.28E-26283347IPR003657WRKY domain
SMARTSM007741.0E-34288346IPR003657WRKY domain
PfamPF031061.8E-24289345IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-36442515IPR003657WRKY domain
SuperFamilySSF1182904.45E-29447515IPR003657WRKY domain
PROSITE profilePS5081137.172450515IPR003657WRKY domain
SMARTSM007741.0E-38455514IPR003657WRKY domain
PfamPF031062.3E-25456513IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MPVRGERPIT KESGGAKSTC YFSPRRASQN PSACLRLHLH LVTATQKRAV AVDSPYLFCF  60
ASLPSHTATP GKKFPQKTLR AGPLPPSPMA AHEGGGNGAR RPPAPPPQLP TLSLPPRSAA  120
GSLFSAESSP GALTLAALLF PDAPSPAFQG SFTQLLVGAM GYPAASAPAP PSPFPVPHGL  180
SPTAFLGGSP GLFSQTGNFE MSHQQALAQV TAEAVHSPYS MINQSDFSLP CSSTTTSVLA  240
SQHVNSSANV SSPREIPTLP SHTDNSNIES TEVSHGFQTT ALTEDKPADD GYNWRKYGQK  300
AVKGGEYPRS YYKCTHLSCP VKKKVERSSD GQITQIIYRG QHNHQRPPKR RSKDGGALLN  360
EADVSPEKED ASTRSEQGSQ DYSGKFKASN DGGPSSSRRG DGGEQISGSS DSNDQGEEEV  420
KVEGGATSDG NANKRHVPAP AQRIIVHTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK  480
CTYQGCDVKK HIERSSQDPK AVITTYEGKH SHDVPAARNS SHSSANANVS SSSNLPHKDR  540
GQRSSRRDVP IRHGVKGCGR RGFANPGTAS RAAGEEGYGR RDFATRHALR HITNKGRRQG  600
LRVTRFRLPT PFAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36274516578Probable WRKY transcription factor 4
2lex_A4e-36274516578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI903e-99WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0E0D2M20.0A0A0E0D2M2_9ORYZ; Uncharacterized protein
STRINGOMERI03G20450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.24e-92WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]