PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G21280.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 147aa    MW: 17168.7 Da    PI: 7.724
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G21280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.55.6e-10110146139
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 
                      kfY +YAk  GFsvrk++ k++  +g i++r+fvCs+eg
  OMERI03G21280.1 110 KFYLDYAKGKGFSVRKNNLKRK--DGDIIWRQFVCSCEG 146
                      6****************99887..999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.1401.4E-281677IPR003213Cytochrome c oxidase, subunit VIb
SuperFamilySSF476942.09E-251977IPR003213Cytochrome c oxidase, subunit VIb
CDDcd009265.53E-291976No hitNo description
ProDomPD0151722.0E-262576No hitNo description
PfamPF022971.0E-132977IPR003213Cytochrome c oxidase, subunit VIb
PfamPF031018.5E-8110147IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0005739Cellular Componentmitochondrion
GO:0004129Molecular Functioncytochrome-c oxidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MMLLVGLQCV SNIISIHQIE IKTAPADFRF PTTNQTRHCF TRYIEYHRCV NAKGEATADC  60
EKFAKYYRSL CPAEWVRSDI MSLSYVSLED QEEYKMMGTV VFSSEEEGYK FYLDYAKGKG  120
FSVRKNNLKR KDGDIIWRQF VCSCEGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6giq_j6e-162177965Cytochrome c oxidase subunit 6B
6hu9_j7e-162176863Cytochrome c oxidase subunit 6B
6hu9_v7e-162176863Cytochrome c oxidase subunit 6B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036172e-98AP003617.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0502H06.
GenBankAP0036222e-98AP003622.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0633E08.
GenBankAP0149622e-98AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-98CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D2V61e-107A0A0E0D2V6_9ORYZ; Uncharacterized protein
STRINGOMERI03G20970.11e-108(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.11e-07FAR1 family protein