PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G21590.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23156.1 Da    PI: 10.3925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G21590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-101653542
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +++ r   f k ++ ++KKA+ELS+L +++++v+++ +
  OMERI03G21590.1 16 SDTIRRAMFKKWQKSLMKKASELSTLYGVDACVVVYVE 53
                     566677889*************************9943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-4464IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.647451IPR002100Transcription factor, MADS-box
CDDcd002663.41E-16589No hitNo description
SuperFamilySSF554552.75E-16698IPR002100Transcription factor, MADS-box
PfamPF003191.6E-101752IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLAIARQKVN LRQLASDTIR RAMFKKWQKS LMKKASELST LYGVDACVVV YVEGEAQPMM  60
VWSSVPEARH VIERFRALPQ KDQYKNTTNL EGFLKQRITN LQEKVDKAKR ENDELETKLL  120
LLNGLDGCLP SLVGLTVEQI TSLNSMVEER LKKLRGNGLL ATPVPTSSKK KIIWDVWYNL  180
KARYVMDDSA KNGRLICRSS RAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0933120.0AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879443.12e-93agamous-like MADS-box protein AGL80
TrEMBLA0A0E0D3071e-147A0A0E0D307_9ORYZ; Uncharacterized protein
STRINGORGLA03G0221500.11e-114(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-19M-type_MADS family protein