PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G22690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 474aa    MW: 50553.6 Da    PI: 4.4633
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G22690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-163382255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  OMERI03G22690.1 33 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 82
                     7******99.**********933...5*************************98 PP
2AP252.61.1e-16258307255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  OMERI03G22690.1 258 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 307
                      7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.973392IPR001471AP2/ERF domain
CDDcd000182.71E-163394No hitNo description
Gene3DG3DSA:3.30.730.103.4E-263394IPR001471AP2/ERF domain
PfamPF008478.3E-103382IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-173393IPR016177DNA-binding domain
SMARTSM003804.5E-313398IPR001471AP2/ERF domain
PRINTSPR003674.9E-83445IPR001471AP2/ERF domain
PRINTSPR003674.9E-85672IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-26258319IPR001471AP2/ERF domain
CDDcd000182.71E-16258319No hitNo description
PfamPF008478.3E-10258307IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17258318IPR016177DNA-binding domain
PROSITE profilePS5103221.97258317IPR001471AP2/ERF domain
SMARTSM003804.5E-31258323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDHIGISGGG GDGGGGGEGG VVAPAQPSSP ERRYKGVRLR KWGRWVSEIR MPNSRERIWL  60
GSYESAEKAA RAFDAAAVCL RGSRGAGSLN FPESPPPDVR RRFPGALLTV EQIQAEAARH  120
ANRPFPANTT AAAGSSSSYS ISQRQEAATP ARSTSNDDTA MSSVPSTDGG AADYDDGGDD  180
VIDWSFMDTL PAMSSSAAST NAELVPAMDD FMYGFLHTMP PSPCEDGGED VMIDANMDQT  240
FFSGGVVAPA QPSSPERRYK GVRLRKWGRW VSEIRMPNSR ERIWLGSYES AEKAARAFDA  300
AAVCLRGSRG AGSLNFPESP PPDVRRRFPG ALLTVEQIQA EAARHANRPF PANTTAAAGS  360
SSSYSISQRQ EAATPARSTS NDDTAMSSVP STDGGAADYD DGGDDVIDWS FMDTLPAMSS  420
SAASTNAELV PAMDDFMYGF LHTMPPSPCE DGGEDVMIDA NMDQTFFSVD LWRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046620.0AP004662.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0048G02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649307.11e-138ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0D3F10.0A0A0E0D3F1_9ORYZ; Uncharacterized protein
STRINGOMERI03G22200.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-23ERF family protein