PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23680.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 390aa    MW: 43879.3 Da    PI: 8.5447
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.3e-1898178997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      d++  + +++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  OMERI03G23680.1  98 DYM--HSMIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKMVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 178
                      333..458*******888888..5669***************..**************************************..66665 PP
2B342.41.2e-133143842796
                      ---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  27 ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L +gD+++++l+++ s+ +++v+ 
  OMERI03G23680.1 314 HLPDRR--QTMVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLGVGDICLLELKKHdSKLTMTVHT 384
                      444333..4677888*********..555555224445557*********************9776999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2485183IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57688181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-2188183IPR015300DNA-binding pseudobarrel domain
CDDcd100176.17E-2090179No hitNo description
SMARTSM010193.1E-1291181IPR003340B3 DNA binding domain
PfamPF023622.8E-1697178IPR003340B3 DNA binding domain
SMARTSM010190.072295389IPR003340B3 DNA binding domain
CDDcd100172.94E-11308383No hitNo description
Gene3DG3DSA:2.40.330.101.2E-13310383IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-12310385IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-12311383IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.01328386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MRKRRKSSSI YGLEIKVETL LTACLLPSLF TLSSLFFHRE MLASFIQELI AHLDIALQFL  60
VHMAGGGSHM KKSCACCKRY LEHLGGKMSC FLIRMTTDYM HSMIIPDRFV NHFGGKIPGT  120
IKLESPNGIL YVVEVTECMN KMVLQCGWEA FVDAHHIKVG DSLLFRHIEN SCFEVMILDS  180
DGCERVFSCA GIKTSSCVQD KTVDPVDTSG RSSDDTAQPS RSERFARCQR DTSNDHRNTA  240
SLTAVSSSSE ESENVSLKSN RNGVSDESQE SEDSEGPAGP PYILSWKSKS RLSSLQKKII  300
KDKELGARYA AAVHLPDRRQ TMVLQRMGQR WDTVMQTKSG RCTTRRFLIN GWSRFVRDNR  360
LGVGDICLLE LKKHDSKLTM TVHTIFSQQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.11e-161PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ6AV211e-105Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0E0D3R30.0A0A0E0D3R3_9ORYZ; Uncharacterized protein
STRINGOMERI03G23090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-13B3 family protein