PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23680.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 343aa    MW: 38556.9 Da    PI: 8.2739
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23680.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.3e-17541311497
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++ ++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  OMERI03G23680.3  54 DIAIIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKMVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 131
                      6679******888888..5669***************..**************************************..66665 PP
2B342.79.9e-142673372796
                      ---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  27 ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L +gD+++++l+++ s+ +++v+ 
  OMERI03G23680.3 267 HLPDRR--QTMVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLGVGDICLLELKKHdSKLTMTVHT 337
                      444333..4677888*********..555555224445557*********************9776999888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-2234136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-2036136IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.05541134IPR003340B3 DNA binding domain
SMARTSM010192.9E-1145134IPR003340B3 DNA binding domain
PfamPF023625.9E-1557131IPR003340B3 DNA binding domain
CDDcd100172.91E-1857132No hitNo description
SMARTSM010190.072248342IPR003340B3 DNA binding domain
CDDcd100171.64E-11261336No hitNo description
PfamPF023626.9E-12263338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-14263336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-12264336IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.01281339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRKRRKSSSI YGLEIKVETL LTACLLPSLF TLSSLFFHRE MLASFIQELI AHLDIAIIPD  60
RFVNHFGGKI PGTIKLESPN GILYVVEVTE CMNKMVLQCG WEAFVDAHHI KVGDSLLFRH  120
IENSCFEVMI LDSDGCERVF SCAGIKTSSC VQDKTVDPVD TSGRSSDDTA QPSRSERFAR  180
CQRDTSNDHR NTASLTAVSS SSEESENVSL KSNRNGVSDE SQESEDSEGP AGPPYILSWK  240
SKSRLSSLQK KIIKDKELGA RYAAAVHLPD RRQTMVLQRM GQRWDTVMQT KSGRCTTRRF  300
LINGWSRFVR DNRLGVGDIC LLELKKHDSK LTMTVHTIFS QQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689972.11e-131PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0619800-like
SwissprotQ6AV212e-78Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0E0D3R50.0A0A0E0D3R5_9ORYZ; Uncharacterized protein
STRINGOMERI03G23090.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-13B3 family protein