PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 420aa    MW: 43905.3 Da    PI: 10.4149
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.82e-22114158246
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                      pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  OMERI03G23850.1 114 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHM 158
                      9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-19111158IPR009057Homeodomain-like
SuperFamilySSF466891.38E-8111157IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-15114157IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MATTAATAPD LSLHISPPSP PDMAAGGETM EQLAEPKLCL GFGTAAAEQY NNGGCNLQQQ  60
QQQRLHQPSQ IQRFKKSASG GSPVCSGGAA GAGGVAAARS RNGGGGGKRS SRAPRMRWTT  120
ALHAHFVQAV ELLGGHERAT PKSVLELMNV KDLTLAHMYR TVKGTTDRTC AEGHGQMRDM  180
GFLRRGGGGV DGFDVLGNTS SIAIANIRRQ AAGSPGEHHQ ETMMSSAWCQ PQFAQQQTTT  240
CGLPLPCPYI VSTHHYLIKQ NQLGGWRGSS GQQLAVQQDA AAHSSLGIKN MGQQRLPAAA  300
AAAGSHDDEI VVASRIGRRS SGTAGFARSS PPAAGCWTPT TTTWSPPPPL TPQTTSTTTT  360
IRGSSVVVAA AAQACMKQQQ TPSRVPSLEI SLGRQGWQSS SSSVIISSSS AAWSPRRPKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927800.0AC092780.6 Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629915.10.0uncharacterized protein LOC9269134 isoform X2
TrEMBLA0A0E0D3T90.0A0A0E0D3T9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27310.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-23G2-like family protein