PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G24280.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 625aa MW: 69057.3 Da PI: 6.9451

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G24280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	29.3	1.7e-09	381	407	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ OMERI03G24280.1 381 KSYCECFASKVYCSESCSCRGCFNDHS 407 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.278	373	457	IPR005172	CRC domain
SMART	SM01114	1.1E-4	374	408	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-6	381	405	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MTQIGSSSCI KQSGPMTIAS KNCSIDRSLS QAYHDSPDNA SILPNNLPRR IQLSSDTLGS 60 DKRHDIAGKT DRETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD 120 YMGTQYDSSV VPESDLRFET AELLLETPKK GDAMPGKSLL PIVEANLENS RRKLFQGSAD 180 CYFQSSVDNI HAYCTSQGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS 240 AVSQHLRGLH RRSLFNDKAR DPTMGVQSVS NLGASTCATR HRSMPDDNYS KLVGSPVCAL 300 PNVDLHLVRM TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PGNQLAPNTS EMNTHNQGDY 360 SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TILSTRNRIE 420 SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIEW FETKEIERAD RKMKDHPKEE 480 QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT 540 RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC 600 RKELALKSII PPFPSLTGDA NSELQ

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MTQIGSSSCI KQSGPMTIAS KNCSIDRSLS QAYHDSPDNA SILPNNLPRR IQLSSDTLGS  60
DKRHDIAGKT DRETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH NDEITACDWD  120
YMGTQYDSSV VPESDLRFET AELLLETPKK GDAMPGKSLL PIVEANLENS RRKLFQGSAD  180
CYFQSSVDNI HAYCTSQGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV PSDYMAMNPS  240
AVSQHLRGLH RRSLFNDKAR DPTMGVQSVS NLGASTCATR HRSMPDDNYS KLVGSPVCAL  300
PNVDLHLVRM TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PGNQLAPNTS EMNTHNQGDY  360
SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHEE TILSTRNRIE  420
SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIEW FETKEIERAD RKMKDHPKEE  480
QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST RTSSHLHSPT  540
RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL RTGNTLSPTC  600
RKELALKSII PPFPSLTGDA NSELQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0D3Z6	0.0	A0A0E0D3Z6_9ORYZ; Uncharacterized protein
STRING	OMERI03G23640.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	4e-26	Tesmin/TSO1-like CXC domain-containing protein