PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G24810.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 155aa    MW: 16180.6 Da    PI: 8.2263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G24810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.91.5e-2155112258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                      +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  OMERI03G24810.1  55 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 112
                      7******************************************986479********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.249115IPR003657WRKY domain
SuperFamilySSF1182904.84E-2150115IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2351115IPR003657WRKY domain
SMARTSM007741.5E-2154114IPR003657WRKY domain
PfamPF031064.9E-2055112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MASNSQTTTT GAGGGRGQGD DEEQTPTPPP APPPETAPST IGGGGGDGVQ LVMPEDGYEW  60
KKYGQKFIKN IQKNRSYFRC RDQRCGAKKK VEWHPHDPGL NLRVVYDGAH HHGSPSSAAG  120
EGGASAAAAA NQYDLSTQYF GGAGGPRSQR GAIQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338591e-113AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149591e-113AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-113CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629814.13e-77probable WRKY transcription factor 2 isoform X1
TrEMBLA0A0E0D4621e-110A0A0E0D462_9ORYZ; Uncharacterized protein
STRINGOMERI03G24140.11e-110(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-12WRKY DNA-binding protein 57