PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G25120.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 178aa MW: 18209.9 Da PI: 4.3612

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G25120.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	69.1	9.5e-22	36	93	16	82
TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 16 keliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 +++isw+++g++fvv+ + efa+++Lpk+Fk +nf+SFvRQLn+YgF ++ ++ weF+ OMERI03G25120.4 36 DDIISWNDDGSTFVVWRPAEFARDLLPKFFKRNNFSSFVRQLNTYGFGNIVPDR---------WEFA 93 79*********************************************9988776.........5554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-20	29	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.7E-23	35	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.3E-20	36	95	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.5E-18	36	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-7	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-7	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSGDLGERAG GEGRSGGRKR GGEELVSSNA GVFSGDDIIS WNDDGSTFVV WRPAEFARDL 60 LPKFFKRNNF SSFVRQLNTY GFGNIVPDRW EFANDASGEG NGGCSVTPPT PATTTTGAVT 120 VAAAIPMALP VTTRDGSQVL SGEEQIISSS SSPEPLLMLS QTPSGSGSGS GGVASGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137991	1e-111	AC137991.3 Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence.
GenBank	AP014959	1e-111	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659656.1	8e-64	PREDICTED: heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	6e-51	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A0E0D4A5	1e-122	A0A0E0D4A5_9ORYZ; Uncharacterized protein
STRING	OB08G29340.1	3e-63	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	2e-33	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]