PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 335aa    MW: 36556.8 Da    PI: 5.8465
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-092432762255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  OMERI03G25440.1 243 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 276
                      59*****************************885 PP
2ELK35.71.8e-12196217122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +Ll+KYsgyL+sL+ E+s
  OMERI03G25440.1 196 ELKSHLLNKYSGYLSSLWRELS 217
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-2259103IPR005540KNOX1
PfamPF037907.1E-2260101IPR005540KNOX1
SMARTSM012561.3E-27109160IPR005541KNOX2
PfamPF037913.3E-22114159IPR005541KNOX2
PfamPF037892.0E-9196217IPR005539ELK domain
PROSITE profilePS5121310.353196216IPR005539ELK domain
SMARTSM011884.0E-7196217IPR005539ELK domain
PROSITE profilePS5007112.455216279IPR001356Homeobox domain
SuperFamilySSF466891.58E-18217289IPR009057Homeodomain-like
SMARTSM003899.5E-12218283IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-25221280IPR009057Homeodomain-like
CDDcd000862.24E-11225279No hitNo description
PfamPF059207.3E-16236275IPR008422Homeobox KN domain
PROSITE patternPS000270254277IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEQQLPLLAP DSKAATSSPL CLTLDNPTST STSPAVPSSA PPATALEPSR QSFHERETDA  60
IKAKIMSHPL YPALLRAFID CQKVGAPPEV VGRLSALAGE LDSRAEDRHQ QGQSSDPELD  120
EFMETYIDML VSYRQELTRP IQEADQFFRN MEAQIDSFTL DDNGCNSSED EQEAGGGDMA  180
AAGLPEITSP CAEDKELKSH LLNKYSGYLS SLWRELSKKK KKGKLPRDAR QKLLHWWQLH  240
YRWPYPSELE KAALAESTGL DAKQINNWFI NQRKRHWKPT PPAMEYRSLQ PAGAASYGGA  300
SAGASTSGGG GSSAVVHGME GQHFTGGGAY PRGGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950030.0HQ695003.1 Oryza sativa fused compound leaf 1 (FCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628832.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX70.0KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A0E0D4E30.0A0A0E0D4E3_9ORYZ; Uncharacterized protein
STRINGOMERI03G24720.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-82KNOTTED-like from Arabidopsis thaliana