PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25970.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 1019aa    MW: 110825 Da    PI: 6.3959
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25970.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.76.3e-064024272954
                      HHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  29 ereeLAkklgLterqVkvWFqNrRak 54 
                      ++  LA+++gLt +q+++WF N R +
  OMERI03G25970.2 402 QKLMLARQTGLTRSQISNWFINARVR 427
                      56679*******************88 PP
2Homeobox23.21.2e-079579892254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OMERI03G25970.2 957 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 989
                      89*****************************88 PP
3BELL119.41.7e-38264335172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  OMERI03G25970.2 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 335
                      689*******************************************************************98 PP
4BELL575e-198138751072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt l  +a+SrhF +L+ ai  ++
  OMERI03G25970.2 813 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTVLMAQAMSRHFGSLRRAILRKL 875
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56188333IPR006563POX domain
PfamPF075264.7E-51194331IPR006563POX domain
SMARTSM003890.001353435IPR001356Homeobox domain
SuperFamilySSF466894.71E-10391437IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-14401437IPR009057Homeodomain-like
CDDcd000867.85E-7402432No hitNo description
PROSITE profilePS500719.41402431IPR001356Homeobox domain
PfamPF059203.8E-9402427IPR008422Homeobox KN domain
SMARTSM005741.8E-16752873IPR006563POX domain
PfamPF075261.0E-19758871IPR006563POX domain
PROSITE profilePS5007111.175930993IPR001356Homeobox domain
SMARTSM003895.4E-9933997IPR001356Homeobox domain
CDDcd000862.61E-10933994No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25938999IPR009057Homeodomain-like
SuperFamilySSF466892.95E-169391001IPR009057Homeodomain-like
PfamPF059201.9E-16950989IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MATYYSSPGN ERDSQAMYPA DSGNSSYPVP SAIGNMLYPG NGSSGPYTEF SGIIQHQQNF  60
MELPGHPTAI SQDSSSREPN MVASYTDQRS FGPAKDMRNE MLMHLMDGAH NAGADLIHND  120
THSSAQIEFG LLNNHNSMSV TPAPGQGLSL SLNTHILAPS YPYWSAKTEL LTPHSYQGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEV VSVWKSIKQK AQKDQAEAGK SDNKEAEGGS  240
KGEGVSSNPQ ESTANAAPEI SAAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQIVVSSF  300
DMVAGSGAAK PYTAVALQTI SKHFRCLKDA INDQINVIRK KLGEEESSSG KEGKLTRLRY  360
IDQQLRQQRA FQHKMLGGHR GDCPKTQFQF FVLGFLNTSF TQKLMLARQT GLTRSQISNW  420
FINARVRLWK PMIEDMYKEE IGEADLDSNS SSDNVPRSKD KIATSEDKED LKSSMSQTYQ  480
PSQLGESKAN IGMMSLGGAP AGFHNEGNQD DSFMNLMLKD QRPGEAEGSL LHDAVAHHSD  540
ENARFMAYHL SGLGRYGNSN VSLTLGLQHP DSRLSVQNTH QPGFAGAGEE IYNSTASLGV  600
AAASSSDYES TNQIDQRQRS SCRIEAAVWL PRPRDWPLAF FVRVNAPCCC HVGPGTMASL  660
WLSEDCKVRL TMVASKQLHS QRCGGHYCQL HHHRPEEIAG AGTESHRSDG SSGCGGAGPM  720
VVLTLGSGAA AAEDDGGGRS RCSCGVGGAA PATMVSALRG SRYLLPAQEL LREAVSAAAA  780
SARGGDDDDE AVASFPHDGK STGIGGGGGG VQAKLLSLLS ELESRHEHYF GELRRVSASF  840
EPALGAGATA GYTVLMAQAM SRHFGSLRRA ILRKLRLHAA AAARTRSALL RLARDAMEED  900
DEGDGEEEEE EEVVNRVVRR TKQAAAARAE QAWRPLRGLP EDAVGVLRAW LFDHFLHPYP  960
NDNEKLMLAV ATGLSRTQIS NWFINARVRL WKPMVEEMYN DEFDDDDAGS GGGGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-16939996158Homeobox protein Meis1
4xrs_B8e-16939996158Homeobox protein Meis1
5bng_A9e-16939997159Homeobox protein Meis2
5bng_B9e-16939997159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679390.0AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0D4K60.0A0A0E0D4K6_9ORYZ; Uncharacterized protein
STRINGOMERI03G25190.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.25e-81BEL1-like homeodomain 6