PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25970.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 1037aa    MW: 113080 Da    PI: 6.3024
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25970.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-084084451954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  OMERI03G25970.4 408 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 445
                      664559******************************88 PP
2Homeobox23.21.2e-0797510072254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox   22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                       ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OMERI03G25970.4  975 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 1007
                       89*****************************88 PP
3BELL119.31.7e-38271342172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iS+hFrcLkdai +qi
  OMERI03G25970.4 271 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISKHFRCLKDAINDQI 342
                      689*******************************************************************98 PP
4BELL56.95.1e-198318931072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt l  +a+SrhF +L+ ai  ++
  OMERI03G25970.4 831 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTVLMAQAMSRHFGSLRRAILRKL 893
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-56195340IPR006563POX domain
PfamPF075264.8E-51201338IPR006563POX domain
PROSITE profilePS5007112.357386449IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-28388458IPR009057Homeodomain-like
CDDcd000861.71E-12389450No hitNo description
SMARTSM003891.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466895.56E-17390455IPR009057Homeodomain-like
PfamPF059201.8E-17406445IPR008422Homeobox KN domain
SMARTSM005741.8E-16770891IPR006563POX domain
PfamPF075261.0E-19776889IPR006563POX domain
PROSITE profilePS5007111.1759481011IPR001356Homeobox domain
SMARTSM003895.4E-99511015IPR001356Homeobox domain
CDDcd000863.42E-109511012No hitNo description
Gene3DG3DSA:1.10.10.604.8E-259561017IPR009057Homeodomain-like
SuperFamilySSF466892.99E-169571019IPR009057Homeodomain-like
PfamPF059202.0E-169681007IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MRSTPSDMAT YYSSPGNERD SQAMYPADSG NSSYPVPSAI GNMLYPGNGS SGPYTEFSGI  60
IQHQQNFMEL PGHPTAISQD SSSREPNMVA SYTDQRSFGP AKDMRNEMLM HLMDGAHNAG  120
ADLIHNDTHS SAQIEFGLLN NHNSMSVTPA PGQGLSLSLN THILAPSYPY WSAKTELLTP  180
HSYQGDDNRM KNMQSEASQA IRNSKYLKAA QELLDEVVSV WKSIKQKAQK DQAEAGKSDN  240
KEAEGGSKGE GVSSNPQEST ANAAPEISAA EKQELQNKMA KLMAMLDEVD RKYKHYYHQM  300
QIVVSSFDMV AGSGAAKPYT AVALQTISKH FRCLKDAIND QINVIRKKLG EEESSSGKEG  360
KLTRLRYIDQ QLRQQRAFQQ YGLLQQNAWR PQRGLPENSV SILRAWLFEH FLHPYPKDSE  420
KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG EADLDSNSSS DNVPRSKDKI  480
ATSEDKEDLK SSMSQTYQPS QLGESKANIG MMSLGGAPAG FHNEGNQDDS FMNLMLKDQR  540
PGEAEGSLLH DAVAHHSDEN ARFMAYHLSG LGRYGNSNVS LTLGLQHPDS RLSVQNTHQP  600
GFAGAGEEIY NSTASLGVAA ASSSDYESTN QIDQRQRSSC RIEAAVWLPR PRDWPLAFFV  660
RVNAPCCCHV GPGTMASLWL SEDCKVRLTM VASKQLHSQR CGGHYCQLHH HRPEEIAGAG  720
TESHRSDGSS GCGGAGPMVV LTLGSGAAAA EDDGGGRSRC SCGVGGAAPA TMVSALRGSR  780
YLLPAQELLR EAVSAAAASA RGGDDDDEAV ASFPHDGKST GIGGGGGGVQ AKLLSLLSEL  840
ESRHEHYFGE LRRVSASFEP ALGAGATAGY TVLMAQAMSR HFGSLRRAIL RKLRLHAAAA  900
ARTRSALLRL ARDAMEEDDE GDGEEEEEEE VVNRVVRRTK QAAAARAEQA WRPLRGLPED  960
AVGVLRAWLF DHFLHPYPND NEKLMLAVAT GLSRTQISNW FINARVRLWK PMVEEMYNDE  1020
FDDDDAGSGG GGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-173951014158Homeobox protein Meis1
4xrs_B6e-173951014158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679390.0AK067939.1 Oryza sativa Japonica Group cDNA clone:J013124I05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631000.10.0BEL1-like homeodomain protein 7
RefseqXP_025879417.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0D4K80.0A0A0E0D4K8_9ORYZ; Uncharacterized protein
STRINGOMERI03G25190.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-105BEL1-like homeodomain 6