PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G25970.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 738aa    MW: 79388.8 Da    PI: 5.9928
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G25970.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.9e-086767082254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yp+ +e+  LA  +gL+ +q+++WF N R +
  OMERI03G25970.5 676 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 708
                      89*****************************88 PP
2BELL57.53.3e-195325941072
             BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      akLlsll e++ r+++y  +l+ v +sFe + g g+ + Yt l  +a+SrhF +L+ ai  ++
  OMERI03G25970.5 532 AKLLSLLSELESRHEHYFGELRRVSASFEPALGAGATAGYTVLMAQAMSRHFGSLRRAILRKL 594
                      8**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-16471592IPR006563POX domain
PfamPF075266.3E-20477590IPR006563POX domain
PROSITE profilePS5007111.175649712IPR001356Homeobox domain
CDDcd000861.47E-10652713No hitNo description
SMARTSM003895.4E-9652716IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-25657718IPR009057Homeodomain-like
SuperFamilySSF466891.92E-16658720IPR009057Homeodomain-like
PfamPF059201.3E-16669708IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MRSTPSDMAT YYSSPGNERD SQAMYPADSG NSSYPVPSAI GNMLYPGNGS SGPYTEFSGI  60
IQHQQNFMEL PGHPTAISQD SSSREPNMVA SYTDQRSFGP AKDMRNEMLM HLMDGAHNAG  120
ADLIHNDTHS SAQIEFGLLN NHNSMSVTPA PGQGLSLSLN THILAPSYPY WSAKTELLTP  180
HSYQGDDNRM KNMQSEASQA IRNSNSMSQT YQPSQLGESK ANIGMMSLGG APAGFHNEGN  240
QDDSFMNLML KDQRPGEAEG SLLHDAVAHH SDENARFMAY HLSGLGRYGN SNVSLTLGLQ  300
HPDSRLSVQN THQPGFAGAG EEIYNSTASL GVAAASSSDY ESTNQIDQRQ RPCRCRSSCR  360
IEAAVWLPRP RDWPLAFFVR LSEDCKVRLT MVASKQLHSQ RCGGHYCQLH HHRPEEIAGA  420
GTESHRSDGS SGCGGAGPMV VLTLGSGAAA AEDDGGGRSR CSCGVGGAAP ATMVSALRGS  480
RYLLPAQELL REAVSAAAAS ARGGDDDDEA VASFPHDGKS TGIGGGGGGV QAKLLSLLSE  540
LESRHEHYFG ELRRVSASFE PALGAGATAG YTVLMAQAMS RHFGSLRRAI LRKLRLHAAA  600
AARTRSALLR LARDAMEEDD EGDGEEEEEE EVVNRVVRRT KQAAAARAEQ AWRPLRGLPE  660
DAVGVLRAWL FDHFLHPYPN DNEKLMLAVA TGLSRTQISN WFINARVRLW KPMVEEMYND  720
EFDDDDAGSG GGGASSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-16658716563Homeobox protein Meis2
4xrm_B5e-16658716563Homeobox protein Meis2
5bng_A3e-16658716159Homeobox protein Meis2
5bng_B3e-16658716159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607460.0AK060746.1 Oryza sativa Japonica Group cDNA clone:001-032-E12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D4K90.0A0A0E0D4K9_9ORYZ; Uncharacterized protein
STRINGOMERI03G25190.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.14e-34BEL1-like homeodomain 11