PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G26810.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 465aa    MW: 47795.9 Da    PI: 4.6892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G26810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014261281121
                      EEETTTTEEESSHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                      ++C++Cg++F ++  L  H  
  OMERI03G26810.1 261 FVCSICGRCFGSHQALGGHVL 281
                      89********99998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.93E-7259283No hitNo description
PROSITE profilePS501579.411261288IPR007087Zinc finger, C2H2
SMARTSM003550.13261283IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-4261279IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576676.93E-7415442No hitNo description
PROSITE profilePS5015710.138420447IPR007087Zinc finger, C2H2
SMARTSM003550.11420442IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-5420444IPR007087Zinc finger, C2H2
PROSITE patternPS000280422442IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAVNSGDRAR ARGHHGDDDE EEGVAVVGED YPYCSDSDSD DDDDVDRYVF LARQPAPPVD  60
RDDADADAGA EGTGCCKRKR RVIVDNDDDD DGFSPRQPAL LDGSGGQAVE EEDDDEGSSD  120
DDDAMAPRGE AGGGGRGRGV GKVSRKKARL VDLIRSPLLP GELDGSDKAA PPPPRGVCPK  180
KIAVVVQAKN RKRRRFVDGG EEQEPQPPVR GKRSRGPDLE ASEVLQTASA AAAAAAAAAA  240
AAAATAAASE AEAAERGSKR FVCSICGRCF GSHQALGGHV LGHKKKAKNA AMAAAARDAT  300
TTAVTDAVAP ASQRTGFFAA DINGQDERGC DGAEGSRYDD DEEKSPVVVD DVAACHDADV  360
DESRGHGKAE TASAIDAGGY AGNNKVAHGD GEENDKIAGV VVASSHDGDS DVGKIKVVQH  420
KCEECGKVCL TGQALGGHMS KHRRTRPAAK GGEGPATATV ADGGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0973680.0AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D4Y90.0A0A0E0D4Y9_9ORYZ; Uncharacterized protein
STRINGOMERI03G26010.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1638077