PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G28040.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 376aa    MW: 40136 Da    PI: 7.0735
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G28040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.12.3e-2788182297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +fqr+wse+De+ +LqGl+ +   +g     d++ fy+ +++s+ + +++sql+eK+rrLK+Kf+++++++++g +p+  ++hd+++++l++++
  OMERI03G28040.1  88 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPSPYTRSQLSEKLRRLKNKFRGMSARVARGLDPARLAPHDRDVLHLCSRL 180
                      79*******************.556878888*************************************************************** PP

           DUF573  96 Wg 97 
                      W+
  OMERI03G28040.1 181 WD 182
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-2489182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASDQTLPVP VSVELPPAAP NPPDPTASLL PLADDPSAPP AAVAAAARKL PVKRRSPPPR  60
PSSPSSSDPA SSDPAAKQQP QQPPPPFKFQ RIWSESDELR FLQGLLGCGA QGLVFPRDLN  120
VFYDRFSESM PSPYTRSQLS EKLRRLKNKF RGMSARVARG LDPARLAPHD RDVLHLCSRL  180
WDPANAATSP FAAAGDASSG NKRRRAAPRT GPLMPPDPSG DSNSHDYNGG ISAGTPGAFG  240
DGHGGEEMMH LEQESVHFGY HGDVAIAADG SLDGIVKVQP ETLPALPSIG DIAVHSENGN  300
GKAVVPRSNE HHMANAVLDI FEECLREVKA NGITYGANVN GGSELARRWR AQRIDELDVL  360
SRRLRLLVED AAAAGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0871810.0AC087181.9 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8338990.0CT833899.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628567.10.0probable transcription factor At5g28040
TrEMBLA0A0E0D5G70.0A0A0E0D5G7_9ORYZ; Uncharacterized protein
STRINGOMERI03G27170.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86953243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-09DNA-binding storekeeper protein-related transcriptional regulator