PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 580aa    MW: 62632.8 Da    PI: 5.9538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.13.6e-1072115803374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + Ll+c +a ++ d  la a La ++  a+ +gdp +Rla+yf+ AL++rla    ++ +  +++++++  s+e +  +k++++++P+ kf+hl
  OMERI03G29130.1 211 QSLLSCSRAAAT-DPGLAAAELASVRAAATDAGDPSERLAFYFADALSRRLAC---GTGAPPSAEPDARFASDELTLCYKTLNDACPYSKFAHL 300
                      7899**998776.89999999*******************************8...5555555566666669999******************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      taNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp  g   + +l +t+ rL++fA+ lgv+fef + + + ++
  OMERI03G29130.1 301 TANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPLLGpqPAASLAATNTRLRDFAKLLGVDFEFVP-LLRPVH 393
                      ****************************************88777*********998888999************************.599*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      +l+ +++ v+p+E++aVn++lql++ll +s +l     +vL+l kslsP vv++ e e+++n+  F++rf++al+yy +lf+sl++ + r+s e
  OMERI03G29130.1 394 ELNKSDFLVEPDEVVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRVGFVDRFANALSYYRSLFESLDVAMTRDSPE 484
                      ***************************88888877...******************************************************** PP

             GRAS 282 rikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372
                      r+ vEr ++g++i  +v   ega+r+er+   ++W+  +e +GF+pvpls++a +qa+lll +++ +  y++ e   +++ l W++rpL++vSa
  OMERI03G29130.1 485 RARVERWMFGERILRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLLTVSA 578
                      *****************8356889*****************************************7778999999999988************* PP

             GRAS 373 Wr 374
                      Wr
  OMERI03G29130.1 579 WR 580
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.426183558IPR005202Transcription factor GRAS
PfamPF035141.3E-104211580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHHLPP PPPPQSMAPH HHQQKHHHHH  60
QQMPAMPQAP PSSHGQIPGQ LAYGGGAAWP AGEHFFADAF GASAGDAVFS DLAAAADFDS  120
DGWMESLIGD APFQDSDLER LIFTTPPPPV PSPPPTHAAA TATATATAAA AAPRPEAAPA  180
LLPQPAAATP VACSSPSPSS ADASCSAPIL QSLLSCSRAA ATDPGLAAAE LASVRAAATD  240
AGDPSERLAF YFADALSRRL ACGTGAPPSA EPDARFASDE LTLCYKTLND ACPYSKFAHL  300
TANQAILEAT GAATKIHIVD FGIVQGIQWA ALLQALATRP EGKPTRIRIT GVPSPLLGPQ  360
PAASLAATNT RLRDFAKLLG VDFEFVPLLR PVHELNKSDF LVEPDEVVAV NFMLQLYHLL  420
GDSDELVRRV LRLAKSLSPA VVTLGEYEVS LNRVGFVDRF ANALSYYRSL FESLDVAMTR  480
DSPERARVER WMFGERILRA VGPEEGADRT ERMAGSSEWQ TLMEWCGFEP VPLSNYARSQ  540
ADLLLWNYDS KYKYSLVELP PAFLSLAWEK RPLLTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.02065801375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1469360.0AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence.
GenBankAK0640220.0AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence.
GenBankAK1016030.0AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence.
GenBankAK1028570.0AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628849.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A0E0D5W30.0A0A0E0D5W3_9ORYZ; Uncharacterized protein
STRINGOMERI03G28180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-143GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]