PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 421aa    MW: 46318.3 Da    PI: 7.8696
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-093443821755
                      HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      el +k +yps++++  LA+++gL+ +q+ +WF N+R ++
  OMERI03G29420.1 344 ELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 382
                      5566789*****************************885 PP
2ELK36.98.1e-13302323122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+Ll+KYsgyL+sLkqE+s
  OMERI03G29420.1 302 ELKHHLLKKYSGYLSSLKQELS 323
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.5E-9111151IPR005540KNOX1
PfamPF037901.1E-12112146IPR005540KNOX1
SMARTSM012564.3E-25201264IPR005541KNOX2
PfamPF037911.8E-14228262IPR005541KNOX2
PROSITE profilePS5121311.331302322IPR005539ELK domain
PfamPF037899.9E-10302323IPR005539ELK domain
SMARTSM011884.9E-7302323IPR005539ELK domain
PROSITE profilePS5007112.617322385IPR001356Homeobox domain
SuperFamilySSF466893.59E-19323398IPR009057Homeodomain-like
SMARTSM003898.5E-13324389IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27327386IPR009057Homeodomain-like
CDDcd000861.97E-12334386No hitNo description
PfamPF059203.7E-16342381IPR008422Homeobox KN domain
PROSITE patternPS000270360383IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEEISHHFGV VGASGGGGHG GHGHHQHQHQ HHHHPWGSSL TAIVAPPPPP QPQQQQQTQA  60
GGMAHTPLTL NTAAAAGNPV LQLANGSLLD ACGKAKEASA SASASYAADV EAIKAKIISH  120
PHYSSLLAAY LDCQKASPTH VVASLATSMH ACSRRRRLIS YMISSYIAYV SWWVVGAPPE  180
VAARLTAVAQ DLELRQRTAL GGLGAATEPE LDQFMLAGGV RACVRAQEAY HEMLVKYREE  240
LTRPLQEAME FLRRVETQLN TLSISGRSLR NILSSGSSEE DQEGSGGETE LPEIDAHGVD  300
QELKHHLLKK YSGYLSSLKQ ELSKKKKKGK LPKDARQQLL NWWELHYKWP YPSESQKVAL  360
AESTGLDLKQ INNWFINQRK RHWKPSDEMQ FVMMDGYHPT NAAAFYMDGH FVNDGGLYRL  420
G
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology (PubMed:10488233, PubMed:8755613, PubMed:9869405). Regulates anther dehiscence via direct repression of the auxin biosynthetic gene YUCCA4 (PubMed:29915329). Binds to the DNA sequence 5'-TGAC-3' in the promoter of the YUCCA4 gene and represses its activity during anther development (PubMed:29915329). Reduction of auxin levels at late stage of anther development, after meiosis of microspore mother cells, is necessary for normal anther dehiscence and seed setting (PubMed:29915329). {ECO:0000269|PubMed:10488233, ECO:0000269|PubMed:29915329, ECO:0000269|PubMed:8755613, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402060.0FJ940206.1 Oryza sativa Japonica Group clone KCB522D03 homeobox protein mRNA, complete cds.
GenBankRICOSH10.0D16507.1 Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629392.10.0homeobox protein knotted-1-like 6
SwissprotP466090.0KNOS6_ORYSJ; Homeobox protein knotted-1-like 6
TrEMBLA0A0E0D6080.0A0A0E0D608_9ORYZ; Uncharacterized protein
STRINGOMERI03G28500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-88KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Song S, et al.
    OsFTIP7 determines auxin-mediated anther dehiscence in rice.
    Nat Plants, 2018. 4(7): p. 495-504
    [PMID:29915329]