PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G29560.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 566aa MW: 59545 Da PI: 7.9047

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G29560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	186	230	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OMERI03G29560.1 186 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 230 79****************************************986 PP
2	QLQ	53.5	7.5e-19	120	156	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan vP+ Ll +i++ OMERI03G29560.1 120 GPFTPSQWIELEHQALIYKYLAANRSVPHSLLIPIRR 156 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.9E-10	120	156	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.6E-14	121	155	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.728	121	156	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	186	230	IPR014977	WRC domain
Pfam	PF08879	2.0E-20	187	229	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MAAVDGGGGG ELGGVGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAP GYGGEQMLSF 60 SSSASSCSSG GGGNAVAAAA AAAAAGGAMP LYYGTPASCS GLSSVSLSSS MQGAMARVRG 120 PFTPSQWIEL EHQALIYKYL AANRSVPHSL LIPIRRSLTS PYSPAYFGSS TLGWGSFQLG 180 YSGSADPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKHVEG QPGHAAKAMP 240 AAVAAAAASA TQPSAPAAHS GGAVAGLAIN HQHQQMKNYA ANIANPCSLQ YSRDLANKHS 300 ESEQVQDSDS LSMLTSISTR NTGSLFPFSK QHNPFEVSNS RPDFGLVSPD SLMSSPHSSL 360 ENVNLLTSQS LNEQQSSVSL QHFVDWPRTP AQGALAWPDA EDMQAQRSQL SISAPMASSD 420 LSSASTSPIH EKLMLSPLKL SREYSPIGLG SAANRDEVNQ GEANWMPMFR DSLMGGPLGE 480 VLTKNNNMEA RNCLSASLNL LNDGWDSSSG FDSSPVGVLQ KTTFGSVSSS TGSSPRLENH 540 SVYDGNSNLR DDLGSVVVNH PSIRLV

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MAAVDGGGGG ELGGVGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAP GYGGEQMLSF  60
SSSASSCSSG GGGNAVAAAA AAAAAGGAMP LYYGTPASCS GLSSVSLSSS MQGAMARVRG  120
PFTPSQWIEL EHQALIYKYL AANRSVPHSL LIPIRRSLTS PYSPAYFGSS TLGWGSFQLG  180
YSGSADPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKHVEG QPGHAAKAMP  240
AAVAAAAASA TQPSAPAAHS GGAVAGLAIN HQHQQMKNYA ANIANPCSLQ YSRDLANKHS  300
ESEQVQDSDS LSMLTSISTR NTGSLFPFSK QHNPFEVSNS RPDFGLVSPD SLMSSPHSSL  360
ENVNLLTSQS LNEQQSSVSL QHFVDWPRTP AQGALAWPDA EDMQAQRSQL SISAPMASSD  420
LSSASTSPIH EKLMLSPLKL SREYSPIGLG SAANRDEVNQ GEANWMPMFR DSLMGGPLGE  480
VLTKNNNMEA RNCLSASLNL LNDGWDSSSG FDSSPVGVLQ KTTFGSVSSS TGSSPRLENH  540
SVYDGNSNLR DDLGSVVVNH PSIRLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	0.0	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628630.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0E0D632	0.0	A0A0E0D632_9ORYZ; Uncharacterized protein
STRING	OMERI03G28660.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-48	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]