PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29690.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 812aa    MW: 84151.9 Da    PI: 6.5103
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-095996361954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  OMERI03G29690.1 599 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636
                      564459******************************88 PP
2BELL68.99.3e-23468530272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r e+q+kkakL+s+l+e   +        ++v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  OMERI03G29690.1 468 RFEHQRKKAKLISMLDEARGQ--------EMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 530
                      779*************97653........89*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-39413528IPR006563POX domain
PfamPF075262.0E-32418527IPR006563POX domain
PROSITE profilePS5007112.6577640IPR001356Homeobox domain
CDDcd000864.78E-13580641No hitNo description
SMARTSM003891.6E-9580644IPR001356Homeobox domain
SuperFamilySSF466892.78E-17582647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28583646IPR009057Homeodomain-like
PfamPF059204.2E-18597636IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MERRRSRRQQ AFHPVSEITM GVVAAEEEEE EGLVVVGRRS TADDGDSGAA GMGIAAPPCQ  60
PGQTTTFVSQ ATNKSSPAAI VRPPATASSS SMSHSQGFHQ ASSGAVFGFS SDGFDGGRPG  120
TGQDQQQHQQ QQQQHVAQQS RRDKLRVQGF DPATAAGHGL LPIEGDEHGA EPGAMYDHAE  180
AAAGASNMLS EMFNFPSQPP TGPSATELLA SQMNANYRFG FRQAAGLAGG EGGWFGGGAA  240
GRTGLVLGGA SLGSLGETSS PKQQASGMAG LAADPAAAMH LFLMNPQQQQ QQSRSSTSPP  300
PSDAQSAIHQ HHEAFQAFGG AGAAFGGGAA AGVVEGQGLS LSLSPSLQQL EMAKQAEELR  360
VRDGVLYFNR QQQQQQQAAA AAASVQQQLP MALHGQVGVL GQQLHGGGYG GPAGVAGVLR  420
NSKYTRAAQE LLEEFCSAAA AAAASSSGAA QSPSSASKEP PQLSPADRFE HQRKKAKLIS  480
MLDEARGQEM VVNFFDSVMG FGAATPYTAL AQKAMSRHFR CLKDAIAAQL RGTCEALGEK  540
DAGTGSGLTK GETPRLRAID QSLRQQRAFH HMGIMEQEAW RPQRGLPERS VNILRSWLFE  600
HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MIEEMYQQEC KELEGSSGAG  660
AGAGDDPSGA DDTHSPTTTG ATAAAAHHQH RHGQLMVEHG GASSGATMSH KHEPGVVAGP  720
SSSSAAAVAD AAFVGIDPVE LLGGDGAAAD DLYGRFDPAG AVRVRYGPAG AAGGGAAAAG  780
DVSLTLGLQH AGAGNAGPDG SGRFSLRDYS GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17586643158Homeobox protein Meis1
4xrs_B2e-17586643158Homeobox protein Meis1
5bng_A2e-17586644159Homeobox protein Meis2
5bng_B2e-17586644159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874760.0AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631398.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0D6640.0A0A0E0D664_9ORYZ; Uncharacterized protein
STRINGOGLUM03G32710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-108BEL1-like homeodomain 4