PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29690.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 804aa    MW: 83335 Da    PI: 6.5658
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29690.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-095916281954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  OMERI03G29690.2 591 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 628
                      564459******************************88 PP
2BELL698.9e-23460522272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r e+q+kkakL+s+l+e   +        ++v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  OMERI03G29690.2 460 RFEHQRKKAKLISMLDEARGQ--------EMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 522
                      779*************97653........89*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-39405520IPR006563POX domain
PfamPF075261.9E-32410519IPR006563POX domain
PROSITE profilePS5007112.6569632IPR001356Homeobox domain
CDDcd000864.71E-13572633No hitNo description
SMARTSM003891.6E-9572636IPR001356Homeobox domain
SuperFamilySSF466892.78E-17574639IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28575638IPR009057Homeodomain-like
PfamPF059204.1E-18589628IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MERRRSRRQQ AFHPVAAEEE EEEGLVVVGR RSTADDGDSG AAGMGIAAPP CQPGQTTTFV  60
SQATNKSSPA AIVRPPATAS SSSMSHSQGF HQASSGAVFG FSSDGFDGGR PGTGQDQQQH  120
QQQQQQHVAQ QSRRDKLRVQ GFDPATAAGH GLLPIEGDEH GAEPGAMYDH AEAAAGASNM  180
LSEMFNFPSQ PPTGPSATEL LASQMNANYR FGFRQAAGLA GGEGGWFGGG AAGRTGLVLG  240
GASLGSLGET SSPKQQASGM AGLAADPAAA MHLFLMNPQQ QQQQSRSSTS PPPSDAQSAI  300
HQHHEAFQAF GGAGAAFGGG AAAGVVEGQG LSLSLSPSLQ QLEMAKQAEE LRVRDGVLYF  360
NRQQQQQQQA AAAAASVQQQ LPMALHGQVG VLGQQLHGGG YGGPAGVAGV LRNSKYTRAA  420
QELLEEFCSA AAAAAASSSG AAQSPSSASK EPPQLSPADR FEHQRKKAKL ISMLDEARGQ  480
EMVVNFFDSV MGFGAATPYT ALAQKAMSRH FRCLKDAIAA QLRGTCEALG EKDAGTGSGL  540
TKGETPRLRA IDQSLRQQRA FHHMGIMEQE AWRPQRGLPE RSVNILRSWL FEHFLHPYPS  600
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMIEEMYQQ ECKELEGSSG AGAGAGDDPS  660
GADDTHSPTT TGATAAAAHH QHRHGQLMVE HGGASSGATM SHKHEPGVVA GPSSSSAAAV  720
ADAAFVGIDP VELLGGDGAA ADDLYGRFDP AGAVRVRYGP AGAAGGGAAA AGDVSLTLGL  780
QHAGAGNAGP DGSGRFSLRD YSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17578635158Homeobox protein Meis1
4xrs_B2e-17578635158Homeobox protein Meis1
5bng_A2e-17578636159Homeobox protein Meis2
5bng_B2e-17578636159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1035500.0AC103550.13 Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence.
GenBankAK0657610.0AK065761.1 Oryza sativa Japonica Group cDNA clone:J013040O19, full insert sequence.
GenBankAK2874760.0AK287476.1 Oryza sativa Japonica Group cDNA, clone: J043023B19, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631398.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0D6650.0A0A0E0D665_9ORYZ; Uncharacterized protein
STRINGOGLUM03G32710.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-108BEL1-like homeodomain 4