PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G29830.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 248aa    MW: 26594.8 Da    PI: 5.759
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G29830.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA473.6e-15166201134
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg
  OMERI03G29830.2 166 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKG 201
                      ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-93368IPR010399Tify domain
PROSITE profilePS5132015.5483368IPR010399Tify domain
PfamPF062006.6E-133567IPR010399Tify domain
PROSITE profilePS5101713.49395137IPR010402CCT domain
PfamPF062034.8E-1695135IPR010402CCT domain
SMARTSM004018.4E-7160215IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-9162201No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13164202IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
PfamPF003207.9E-13166201IPR000679Zinc finger, GATA-type
CDDcd002021.89E-11166201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005978Biological Processglycogen biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0009570Cellular Componentchloroplast stroma
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0008878Molecular Functionglucose-1-phosphate adenylyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAEPPADGR DHPADDGAAG DGAAESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ  60
AVLLVLGGSD MPPGLVSMAV PTTFDEKSTT VAARRVASLM RFREKRKERC FDKKIRYSVR  120
KEVAQKMKRR KGQFAGRADF GDGSCSSAPC GSTANGEDDH IRETHCQNCG ISSRLTPAMR  180
RGPAGPRSLC NACGLMWANK GDTDDSKANL CAEHNQTTMK TDTEMVPEQE QKADVLPPTK  240
EEDSMATS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-156GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-157GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0D6860.0A0A0E0D686_9ORYZ; Uncharacterized protein
STRINGORUFI03G34610.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-54ZIM-LIKE 2