PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 287aa    MW: 30704 Da    PI: 6.7994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18126176356
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+++AeIrd +    r +r++lg+f ta+eAa a++ a+++++g+
  OMERI03G30010.1 126 YRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDMAALRMRGH 176
                      9*******.**********433...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-30125184IPR001471AP2/ERF domain
PROSITE profilePS5103223.248125183IPR001471AP2/ERF domain
SMARTSM003805.9E-34125189IPR001471AP2/ERF domain
PfamPF008471.3E-14125176IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21126184IPR016177DNA-binding domain
PRINTSPR003672.9E-10126137IPR001471AP2/ERF domain
CDDcd000182.16E-21133183No hitNo description
PRINTSPR003672.9E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAIGAAPASS QPHDTSNILE NVWASIMTST SSPAVSSSVA VSSAAVTGQE ENNSAILQRL  60
PSLGRWISMG AEEWDELLLS GAALASESSG ELQLVAASPG DHNQVVGGGD GANYRTTATA  120
AARRSYRGVR RRPWGKFAAE IRDTRRRGAR VWLGTFATAD EAALAYDMAA LRMRGHRAHL  180
NFPLATVQKH LERDLADAGA AGGRSSSDQT SIRARRRRRR ANTTTDAAAR SVVFSGVQTA  240
TNCDHMVSFA SEKDQISMQE CSTSDAGVID FEEIGGEYWD YLFPPLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-26124184464ATERF1
3gcc_A9e-26124184464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214219RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241430.0AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.11e-116PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A0E0D6B90.0A0A0E0D6B9_9ORYZ; Uncharacterized protein
STRINGOMERI03G29180.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-11ethylene-responsive element binding factor 15