PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G30520.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 305aa    MW: 32793.9 Da    PI: 5.031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G30520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.86.9e-26107167158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y g+H++
  OMERI03G30520.1 107 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 167
                      58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-2794169IPR003657WRKY domain
SuperFamilySSF1182901.23E-24101169IPR003657WRKY domain
PROSITE profilePS5081121.264102165IPR003657WRKY domain
SMARTSM007741.3E-39107169IPR003657WRKY domain
PfamPF031065.4E-25108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA FKKRQVMGMA KVRRQVRVTS VQDTASLDDG LSWRKYGQKD  120
ILGAKYPRAY FRCTHRHTQG CNATKQVQRA DGDPLLFDVV YLGDHTCGQA AVAAVAQSAP  180
PEHAGQEQQR QSSLLAAGTE GIHQQVVAEP MEAAAAAAAA PLLFTSTAAG GVDDGYFSFI  240
SPANSDCQFS SDFSAGSVGV DMDHEARFED LFSNTLEFFQ SEIQNLVTFF LVGAFIAIAI  300
NEFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23106167768OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
GenBankHQ8588600.0HQ858860.1 Oryza sativa Japonica Group isolate UT1669 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.10.0probable WRKY transcription factor 41
TrEMBLA0A0E0D6J00.0A0A0E0D6J0_9ORYZ; Uncharacterized protein
STRINGOMERI03G29730.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-32WRKY DNA-binding protein 46