PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31930.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 1269aa    MW: 138540 Da    PI: 6.3804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31930.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.5e-2810281084259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  OMERI03G31930.2 1028 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 1084
                       8****************************************.***************7 PP
2WRKY101.45.2e-3211681226159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                       ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  OMERI03G31930.2 1168 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 1226
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.128.201.2E-1528136IPR012674Calycin
SuperFamilySSF508141.35E-53652IPR011038Calycin-like
SuperFamilySSF508141.35E-579136IPR011038Calycin-like
PfamPF122044.3E-12107288IPR022017Domain of unknown function DUF3598
SuperFamilySSF508141.9E-29152293IPR011038Calycin-like
Gene3DG3DSA:2.40.128.205.5E-42153293IPR012674Calycin
SuperFamilySSF508147.22E-21379474IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.3E-31385558IPR012674Calycin
PfamPF122043.5E-14389710IPR022017Domain of unknown function DUF3598
SuperFamilySSF508147.22E-21501558IPR011038Calycin-like
SuperFamilySSF508142.03E-29574715IPR011038Calycin-like
Gene3DG3DSA:2.40.128.205.4E-42575715IPR012674Calycin
PROSITE profilePS5081122.76810221086IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-2610221086IPR003657WRKY domain
SuperFamilySSF1182901.44E-2210261086IPR003657WRKY domain
SMARTSM007749.8E-3110271085IPR003657WRKY domain
PfamPF031061.8E-2110281084IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-3311531228IPR003657WRKY domain
SuperFamilySSF1182901.96E-2711601228IPR003657WRKY domain
PROSITE profilePS5081136.05911631228IPR003657WRKY domain
SMARTSM007744.4E-3611681227IPR003657WRKY domain
PfamPF031069.6E-2411691226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006452Biological Processtranslational frameshifting
GO:0045901Biological Processpositive regulation of translational elongation
GO:0045905Biological Processpositive regulation of translational termination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0043022Molecular Functionribosome binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1269 aa     Download sequence    Send to blast
MGRCSILRLY IKQASSQISF VDEEDSEEWV EYKIKETNMF TVDKYQQVGF FQEEKAFALR  60
YQTAGMLETV LRAGVLGEDD TGEESPKNLK IPSRKPSIVC ENCLYSLEGN GRVRAFHIMD  120
PKGVLDMLII FHEKQGSEVP LIYFSDDADI TNNDRTAPLL GRWEGRSVTK RSGVYGATLS  180
EADTVVLLEK DRNGQLILDN MSTKSGSSTT TTVHWTGSAN NNLLQFDGGY EMTLLPGGMY  240
MGYPTDIGKI VNDMDSFHLE FCWMESPGKR QRLVRTYDSA GLAVSSTYFF ETKLVTRRPL  300
HSSPLRSLCS AMAEALVAVL RLAASAAATA RPQSRSGRHG SCAARVPCPG PSPFRRGRLC  360
ARAAVAGPPE VDDDDAMTID NLRRFFDVNV GKWNGAFYQF DAHGRVLQGI STRLSVSTYG  420
EDDLISLLQS LYIKQASSQI SFVDEEDSEE WVEYKIKETN MFTVDKYQQV GFFQEEKAFA  480
LRYQTAGMLE TVLRAGVLGE DDTGEESPKN LKIPSRKPSI VCENCLYSLE GNGRVRAFHI  540
MDPKGVLDML IIFHEKQGSE VPLIYFSDDA DITNNDRTAP LLGRWEGRSV TKRSGVYGAT  600
LSEADTVVLL EKDRNGQLIL DNMSTKSGSS TTTTVHWTGS ANNNLLQFDG GYEMTLLPGG  660
MYMGYPTDIG KIVNDMDSFH LEFCWMESPG KRQRLVRTYD SAGLAVSSTY FFETKRLSSL  720
KPHHLRRRVG DHGRTPDLSN ANSVAGEGEG GDRFRRRRVA AATAGAIDRA KSPEEGDGFR  780
WFWKYSAQAV GASQSNPNTS LSDPLSWSAA VVVIDREALP LHKQRKLRRA AAAAMADRRC  840
GDGGDGMQQQ PFTSPGQERV FDGGGGGVPG QVAAPYGSDF DQSSYMALLA AGAVGAGVGV  900
QPTAEPWAVE EDVAAAPPGI SLAPQFSMAN YAPPPSYQHP ATLVSPPLAA GLHPYPPYLH  960
GVDAPPPQWP PRPAPPPSFS VLDLAAAAPP HEQRHSMQQL LLRAAAFGGG MHAAAAPAAA  1020
AAIEQPAKDG YNWRKYGQKQ LKDAESPRSY YKCTRDGCPV KKIVERSSDG CIKEITYKGR  1080
HSHPRPVEPR RGGAAGSSSS AMAAGTDHNA GAAAVDEDDP SDDDDTLLHE DDDDGEEGHD  1140
RGVDGEIGQR VVRKPKIILQ TRSEVDLLDD GYRWRKYGQK VVKGNPRPRS YYKCTADGCN  1200
VRKQIERASA DPKCVLTTYT GRHNHDPPGR PAAAAANLQM PGPAAMSLAG GGTAHQQPSG  1260
GARQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-146971515357BFA1
5yvf_B1e-146971515357BFA1
5yvf_C1e-146971515357BFA1
5yvf_D1e-146971515357BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630963.20.0uncharacterized protein LOC4334178
TrEMBLA0A0E0D7310.0A0A0E0D731_9ORYZ; Uncharacterized protein
STRINGOMERI03G31200.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.16e-36WRKY DNA-binding protein 3