PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31930.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 980aa    MW: 106019 Da    PI: 7.0521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31930.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28739795259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+ k++e prsYY+Ct  gCpvkk vers+ d+ + eitY+g+H h+
  OMERI03G31930.4 739 KDGYNWRKYGQKQLKDAESPRSYYKCTRDGCPVKKIVERSS-DGCIKEITYKGRHSHP 795
                      8****************************************.***************7 PP
2WRKY101.93.8e-32879937159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg++ prsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  OMERI03G31930.4 879 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 937
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508144.96E-2190185IPR011038Calycin-like
Gene3DG3DSA:2.40.128.209.0E-3296269IPR012674Calycin
PfamPF122042.1E-14100421IPR022017Domain of unknown function DUF3598
SuperFamilySSF508144.96E-21212269IPR011038Calycin-like
SuperFamilySSF508141.4E-29285426IPR011038Calycin-like
Gene3DG3DSA:2.40.128.203.7E-42286426IPR012674Calycin
Gene3DG3DSA:2.20.25.805.4E-26733797IPR003657WRKY domain
PROSITE profilePS5081122.768733797IPR003657WRKY domain
SuperFamilySSF1182901.02E-22737797IPR003657WRKY domain
SMARTSM007749.8E-31738796IPR003657WRKY domain
PfamPF031061.3E-21739795IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-34864939IPR003657WRKY domain
SuperFamilySSF1182901.44E-27871939IPR003657WRKY domain
PROSITE profilePS5081136.059874939IPR003657WRKY domain
SMARTSM007744.4E-36879938IPR003657WRKY domain
PfamPF031067.0E-24880937IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006452Biological Processtranslational frameshifting
GO:0045901Biological Processpositive regulation of translational elongation
GO:0045905Biological Processpositive regulation of translational termination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0043022Molecular Functionribosome binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MGRCSILRRP LHSSPLRSLC SAMAEALVAV LRLAASAAAT ARPQSRSGRH GSCAARVPCP  60
GPSPFRRGRL CARAAVAGPP EVDDDDAMTI DNLRRFFDVN VGKWNGAFYQ FDAHGRVLQG  120
ISTRLSVSTY GEDDLISLLQ SLYIKQASSQ ISFVDEEDSE EWVEYKIKET NMFTVDKYQQ  180
VGFFQEEKAF ALRYQTAGML ETVLRAGVLG EDDTGEESPK NLKIPSRKPS IVCENCLYSL  240
EGNGRVRAFH IMDPKGVLDM LIIFHEKQGS EVPLIYFSDD ADITNNDRTA PLLGRWEGRS  300
VTKRSGVYGA TLSEADTVVL LEKDRNGQLI LDNMSTKSGS STTTTVHWTG SANNNLLQFD  360
GGYEMTLLPG GMYMGYPTDI GKIVNDMDSF HLEFCWMESP GKRQRLVRTY DSAGLAVSST  420
YFFETKRLSS LKPHHLRRRV GDHGRTPDLS NANSVAGEGE GGDRFRRRRV AAATAGAIDR  480
AKSPEEGDGF RWFWKYSAQA VGASQSNPNT SLSDPLSWSA AVVVIDREAL PLHKQRKLRR  540
AAAAAMADRR CGDGGDGMQQ QPFTSPGQER VFDGGGGGVP GQVAAPYGSD FDQSSYMALL  600
AAGAVGAGVG VQPTAEPWAV EEDVAAAPPG ISLAPQFSMA NYAPPPSYQH PATLVSPPLA  660
AGLHPYPPYL HGVDAPPPQW PPRPAPPPSF SVLDLAAAAP PHEQRHSMQQ LLLRAAAFGG  720
GMHAAAAPAA AAAIEQPAKD GYNWRKYGQK QLKDAESPRS YYKCTRDGCP VKKIVERSSD  780
GCIKEITYKG RHSHPRPVEP RRGGAAGSSS SAMAAGTDHN AGAAAVDEDD PSDDDDTLLH  840
EDDDDGEEGH DRGVDGEIGQ RVVRKPKIIL QTRSEVDLLD DGYRWRKYGQ KVVKGNPRPR  900
SYYKCTADGC NVRKQIERAS ADPKCVLTTY TGRHNHDPPG RPAAAAANLQ MPGPAAMSLA  960
GGGTAHQQPS GGARQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1498542615356BFA1
5yvf_B1e-1498542615356BFA1
5yvf_C1e-1498542615356BFA1
5yvf_D1e-1498542615356BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418520.0AY341852.1 Oryza sativa (japonica cultivar-group) WRKY11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D7330.0A0A0E0D733_9ORYZ; Uncharacterized protein
STRINGOMERI03G31200.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.15e-36WRKY DNA-binding protein 3