PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G31930.6
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 180aa    MW: 19549.5 Da    PI: 10.1511
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G31930.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY599.1e-19951371759
                      T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      g +  rsYY+Ct  gC+v+k++er++ dpk+v +tY+g+Hnh+
  OMERI03G31930.6  95 GIPLVRSYYKCTADGCNVRKQIERASADPKCVLTTYTGRHNHD 137
                      66889*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-1787139IPR003657WRKY domain
SMARTSM007747.0E-1191138IPR003657WRKY domain
SuperFamilySSF1182902.62E-1494139IPR003657WRKY domain
PROSITE profilePS5081121.34595139IPR003657WRKY domain
PfamPF031061.9E-1295137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006452Biological Processtranslational frameshifting
GO:0045901Biological Processpositive regulation of translational elongation
GO:0045905Biological Processpositive regulation of translational termination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0043022Molecular Functionribosome binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLSVWPRAKE EYLNGQAKIK NSMQTCLLQL GCMCMKKNIL PPLTLAKSLS RSSSSESAES  60
RMLTESYHAS SQITAKAMAY KSKETDKRKG KREMGIPLVR SYYKCTADGC NVRKQIERAS  120
ADPKCVLTTY TGRHNHDPPG RPAAAAANLQ MPGPAAMSLA GGGTAHQQPS GGARQMKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-15951393377Probable WRKY transcription factor 4
2lex_A1e-15951393377Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-121CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D7351e-130A0A0E0D735_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-17WRKY DNA-binding protein 3